Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_H03
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    51   3e-07
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    49   8e-07
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    29   0.88 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   6.2  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   8.2  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 26/46 (56%), Positives = 28/46 (60%)
 Frame = +1

Query: 703 VTKALKAQRKVVKGEHGKRVRKIRXSVHFRRPKTFEPPXHPKYQRK 840
           V KA  AQ+ V KG H K  RK+R S  FRRPKT E    PKY RK
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARK 48


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 24/46 (52%), Positives = 28/46 (60%)
 Frame = +1

Query: 703 VTKALKAQRKVVKGEHGKRVRKIRXSVHFRRPKTFEPPXHPKYQRK 840
           V KA  AQ+ V KG H K  +K+R S  FRRPKT +    PKY RK
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARK 48


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 58  DATEEATREIQGPPGPNPAEKKPGNSQEH 144
           D+  +A ++ +GP GPNP   K  +S+ H
Sbjct: 206 DSAPKANKKRKGPKGPNPLSIKKRSSKNH 234


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 603 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 692
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 808 EPPXHPKYQRKXC 846
           EPP HPKY+ + C
Sbjct: 358 EPPRHPKYKSERC 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,520
Number of Sequences: 5004
Number of extensions: 27786
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)