Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_H03
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    47   2e-05
U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    46   4e-05
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/46 (47%), Positives = 29/46 (63%)
 Frame = +1

Query: 703 VTKALKAQRKVVKGEHGKRVRKIRXSVHFRRPKTFEPPXHPKYQRK 840
           V KA++A++ VVKG      + +R SVHFRRPKT      P+Y RK
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARK 53


>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 21/44 (47%), Positives = 29/44 (65%)
 Frame = +1

Query: 709 KALKAQRKVVKGEHGKRVRKIRXSVHFRRPKTFEPPXHPKYQRK 840
           KAL A++KVVKG+     R++R SVHFRRP T +     ++ RK
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRK 54


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 762  YSLPMFTFYNLPLSLKCFSNRFHYFF 685
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 700 PVTKALKAQRKVVKGEHGKRVRKI-RXSVHFRRPKTFEPPXHPKYQRKXCLXXXH 861
           P  K LK   K+ K +H K ++K+    +  + P    PP HP Y R       H
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSRAISYDDLH 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,066,981
Number of Sequences: 27780
Number of extensions: 174824
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)