Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_H02
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 209 5e-55
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 208 6e-55
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 29 0.87
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 1.1
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 4.6
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 27 4.6
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 6.1
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.1
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 6.1
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 209 bits (510), Expect = 5e-55
Identities = 101/157 (64%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Frame = +3
Query: 87 MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 266
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 267 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 446
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 447 AAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 554
A GKTV L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 208 bits (509), Expect = 6e-55
Identities = 101/157 (64%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Frame = +3
Query: 87 MTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 266
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 267 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 446
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 447 AAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 554
A GKTV L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 29.1 bits (62), Expect = 0.87
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -1
Query: 199 SPTLYTFMYVESGIVPCVRNLRANKXLVPRR*PLEFVIF----EPCVTKLDGSRKQILRN 32
S L+ F+ + IVPC+ + + ++P R EF+ F + C+ D + +++N
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802
Query: 31 S 29
+
Sbjct: 803 A 803
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -3
Query: 527 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 363
GF S+T SF+G W+ L + + G L G LQ + +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 362 TDIDALRYN 336
++RY+
Sbjct: 504 RAFGSIRYS 512
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -1
Query: 97 EFVIFEPCVTKLDG 56
EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +3
Query: 27 REFLKICFLDPSSFVTQGSKMTNSKGYRRGTRXLFARRFRTHGTIPLSTYMKVYKVGDIV 206
++FLK F DPS FV + + K Y G R R +P + D +
Sbjct: 686 KKFLKSWFADPSKFVDRTPENAPWKPYWFGIRDRMYRSGDLGRYLPTGNVECSGRADDQI 745
Query: 207 DIRG 218
IRG
Sbjct: 746 KIRG 749
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -3
Query: 458 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 294
+A SLG Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 817 CLLQLIMVTNKAIASQISXIKHFFH 743
CL+ L TN I ++ KHFFH
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFH 790
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 158 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 262
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,548
Number of Sequences: 5004
Number of extensions: 57571
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -