Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_H01
         (910 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA...   173   4e-43
M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal prot...   158   8e-39
U43733-1|AAA86639.1|  904|Drosophila melanogaster Abrupt protein.      29   6.7  
BT003807-1|AAO41490.1|  369|Drosophila melanogaster AT11330p pro...    29   6.7  
BT001583-1|AAN71338.1|  894|Drosophila melanogaster RE25924p pro...    29   6.7  
AY094967-1|AAM11320.1| 1711|Drosophila melanogaster SD07675p pro...    29   6.7  
AE014134-2051|AAN10774.1|  894|Drosophila melanogaster CG4807-PB...    29   6.7  
AE014134-2050|AAF53087.2|  904|Drosophila melanogaster CG4807-PA...    29   6.7  
AE013599-3504|AAF46928.2| 1711|Drosophila melanogaster CG3820-PA...    29   6.7  
Z11527-1|CAA77616.1|  614|Drosophila melanogaster CYS3HIS finger...    29   8.8  
BT021256-1|AAX33404.1|  608|Drosophila melanogaster RE58038p pro...    29   8.8  
AE014297-3282|AAO41594.1|  599|Drosophila melanogaster CG4620-PB...    29   8.8  
AE014297-3281|AAO41593.1|  599|Drosophila melanogaster CG4620-PA...    29   8.8  

>AE013599-3487|AAF46914.1|  140|Drosophila melanogaster CG3661-PA
           protein.
          Length = 140

 Score =  173 bits (420), Expect = 4e-43
 Identities = 83/87 (95%), Positives = 84/87 (96%)
 Frame = +2

Query: 212 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 391
           GAKNLYVIAV GI+GRLNRLPAAG GDM VATVKKGKPELRKKVMPAVVIRQRKPFRRRD
Sbjct: 33  GAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 92

Query: 392 GVFIYFEDNAGVIVNNKGEMKGSAITG 472
           GVFIYFEDNAGVIVNNKGEMKGSAITG
Sbjct: 93  GVFIYFEDNAGVIVNNKGEMKGSAITG 119



 Score = 69.7 bits (163), Expect = 5e-12
 Identities = 31/35 (88%), Positives = 33/35 (94%)
 Frame = +1

Query: 115 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGXK 219
           MSKRGRGG+AG KFRISLGLPVGAV+NCADNTG K
Sbjct: 1   MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAK 35



 Score = 35.1 bits (77), Expect = 0.13
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 471 GPVAKECADLWPR 509
           GPVAKECADLWPR
Sbjct: 119 GPVAKECADLWPR 131


>M85295-1|AAA28867.1|  140|Drosophila melanogaster ribosomal protein
           L17A protein.
          Length = 140

 Score =  158 bits (384), Expect = 8e-39
 Identities = 77/87 (88%), Positives = 78/87 (89%)
 Frame = +2

Query: 212 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 391
           GAKNLYVIAV GI+GRLNRLPAAG GDM VATVKKGKPELRKKV      RQRKPFRRRD
Sbjct: 33  GAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVSVVPSARQRKPFRRRD 92

Query: 392 GVFIYFEDNAGVIVNNKGEMKGSAITG 472
           GVFIYFEDNAGVIVNNKGEMKGSAITG
Sbjct: 93  GVFIYFEDNAGVIVNNKGEMKGSAITG 119



 Score = 69.7 bits (163), Expect = 5e-12
 Identities = 31/35 (88%), Positives = 33/35 (94%)
 Frame = +1

Query: 115 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGXK 219
           MSKRGRGG+AG KFRISLGLPVGAV+NCADNTG K
Sbjct: 1   MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAK 35



 Score = 35.1 bits (77), Expect = 0.13
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 471 GPVAKECADLWPR 509
           GPVAKECADLWPR
Sbjct: 119 GPVAKECADLWPR 131


>U43733-1|AAA86639.1|  904|Drosophila melanogaster Abrupt protein.
          Length = 904

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 420 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 250
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842


>BT003807-1|AAO41490.1|  369|Drosophila melanogaster AT11330p
           protein.
          Length = 369

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 420 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 250
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 250 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 307


>BT001583-1|AAN71338.1|  894|Drosophila melanogaster RE25924p
           protein.
          Length = 894

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 420 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 250
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832


>AY094967-1|AAM11320.1| 1711|Drosophila melanogaster SD07675p
           protein.
          Length = 1711

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +2

Query: 176 QWEQ*STAPTTQGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAV 355
           QWEQ            +++  ++GI  RL RL    S   IV    K K + R  +  A+
Sbjct: 739 QWEQFQDVVRRNSKSRMHMPCLEGIYQRLTRLQNLTSNQRIVQNNIKSKLKERGLLQAAL 798

Query: 356 VIRQRKPFRRRDGV 397
           + +++   R  + V
Sbjct: 799 LDQEKSRTRTNEAV 812


>AE014134-2051|AAN10774.1|  894|Drosophila melanogaster CG4807-PB,
           isoform B protein.
          Length = 894

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 420 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 250
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832


>AE014134-2050|AAF53087.2|  904|Drosophila melanogaster CG4807-PA,
           isoform A protein.
          Length = 904

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 420 ALSSKYINTPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 250
           A+     N P  LL G F      AG   F  SG P LT+  IM  E AAG+L   RPL
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842


>AE013599-3504|AAF46928.2| 1711|Drosophila melanogaster CG3820-PA
           protein.
          Length = 1711

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +2

Query: 176 QWEQ*STAPTTQGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAV 355
           QWEQ            +++  ++GI  RL RL    S   IV    K K + R  +  A+
Sbjct: 739 QWEQFQDVVRRNSKSRMHMPCLEGIYQRLTRLQNLTSNQRIVQNNIKSKLKERGLLQAAL 798

Query: 356 VIRQRKPFRRRDGV 397
           + +++   R  + V
Sbjct: 799 LDQEKSRTRTNEAV 812


>Z11527-1|CAA77616.1|  614|Drosophila melanogaster CYS3HIS finger
           protein protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 362 RQRKPFRRRDGVFIYFEDN 418
           R+R+P R+RDG F Y  DN
Sbjct: 72  RRRRPVRKRDGTFNYSADN 90


>BT021256-1|AAX33404.1|  608|Drosophila melanogaster RE58038p
           protein.
          Length = 608

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 362 RQRKPFRRRDGVFIYFEDN 418
           R+R+P R+RDG F Y  DN
Sbjct: 66  RRRRPVRKRDGTFNYSADN 84


>AE014297-3282|AAO41594.1|  599|Drosophila melanogaster CG4620-PB,
           isoform B protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 362 RQRKPFRRRDGVFIYFEDN 418
           R+R+P R+RDG F Y  DN
Sbjct: 57  RRRRPVRKRDGTFNYSADN 75


>AE014297-3281|AAO41593.1|  599|Drosophila melanogaster CG4620-PA,
           isoform A protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 362 RQRKPFRRRDGVFIYFEDN 418
           R+R+P R+RDG F Y  DN
Sbjct: 57  RRRRPVRKRDGTFNYSADN 75


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,863,534
Number of Sequences: 53049
Number of extensions: 713565
Number of successful extensions: 1861
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4443987051
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)