Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_H01
         (910 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   153   2e-37
Z81512-8|CAH19099.1|  509|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81512-7|CAD54133.1|  504|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL033515-2|CAH19093.1|  509|Caenorhabditis elegans Hypothetical ...    29   3.5  
AL033515-1|CAD54179.1|  504|Caenorhabditis elegans Hypothetical ...    29   3.5  
AL033511-2|CAH19091.1|  509|Caenorhabditis elegans Hypothetical ...    29   3.5  
AL033511-1|CAA22072.2|  504|Caenorhabditis elegans Hypothetical ...    29   3.5  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  153 bits (371), Expect = 2e-37
 Identities = 72/87 (82%), Positives = 79/87 (90%)
 Frame = +2

Query: 212 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 391
           GAKNL+VI+V GI+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+D
Sbjct: 33  GAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKD 92

Query: 392 GVFIYFEDNAGVIVNNKGEMKGSAITG 472
           G FIYFEDNAGVIVNNKGEMKGSAITG
Sbjct: 93  GTFIYFEDNAGVIVNNKGEMKGSAITG 119



 Score = 71.3 bits (167), Expect = 9e-13
 Identities = 38/61 (62%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
 Frame = +1

Query: 115 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGXKE----SVCDRSPRYQRSPEQTAGGR 282
           MSKRGRGG++GAKFRISLGLPVGAV+NCADNTG K     SV     R  R P    G  
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDM 60

Query: 283 F 285
           F
Sbjct: 61  F 61



 Score = 35.1 bits (77), Expect = 0.070
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 471 GPVAKECADLWPR 509
           GPVAKECADLWPR
Sbjct: 119 GPVAKECADLWPR 131


>Z81512-8|CAH19099.1|  509|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1b protein.
          Length = 509

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 270 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVS 103
           SL RRPL     +T+  +  C +  V   + + T G+ E R     T+ L   V+S
Sbjct: 267 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLS 322


>Z81512-7|CAD54133.1|  504|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1a protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 270 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVS 103
           SL RRPL     +T+  +  C +  V   + + T G+ E R     T+ L   V+S
Sbjct: 262 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLS 317


>AL033515-2|CAH19093.1|  509|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1b protein.
          Length = 509

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 270 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVS 103
           SL RRPL     +T+  +  C +  V   + + T G+ E R     T+ L   V+S
Sbjct: 267 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLS 322


>AL033515-1|CAD54179.1|  504|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1a protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 270 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVS 103
           SL RRPL     +T+  +  C +  V   + + T G+ E R     T+ L   V+S
Sbjct: 262 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLS 317


>AL033511-2|CAH19091.1|  509|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1b protein.
          Length = 509

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 270 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVS 103
           SL RRPL     +T+  +  C +  V   + + T G+ E R     T+ L   V+S
Sbjct: 267 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLS 322


>AL033511-1|CAA22072.2|  504|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1a protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 270 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVS 103
           SL RRPL     +T+  +  C +  V   + + T G+ E R     T+ L   V+S
Sbjct: 262 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLS 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,733,597
Number of Sequences: 27780
Number of extensions: 333621
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)