Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_G23
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 31 0.29
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 0.90
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 1.6
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.6
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 2.7
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 26 6.3
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 8.4
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 8.4
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 8.4
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 30.7 bits (66), Expect = 0.29
Identities = 24/106 (22%), Positives = 51/106 (48%)
Frame = +1
Query: 370 GKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKF 549
G ID++ +++KR Y ++ ++ LE ++R + EISD +++ L
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL---- 892
Query: 550 VKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTWKRKTI 687
+ +V+ + AK+ ++ A + L + +KKE K K++
Sbjct: 893 -EELQHEVATRIEQDAKINERNAA---KRSLLLARKKECNEKIKSL 934
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 29.1 bits (62), Expect = 0.90
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 430 YHERIARLEDEKFDLEYIVKRKDMEISDLNS---QVNDLRGKFVKPTLKKVSKYENKFAK 600
+H+ + +DE Y++ K ME +L+ QVN + K +K VS + N +A+
Sbjct: 578 FHQLVFSADDEYLASVYLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVW-NTYAQ 636
Query: 601 LQKKAAEF 624
L+ + F
Sbjct: 637 LEHLSGAF 644
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 562 LKKVSKYENKFA--KLQKKAAEFNFRN--QLKVVKKKEFTWKRK 681
L+ SKY +K KLQKK E RN + K KKK+ KRK
Sbjct: 91 LRPYSKYASKNIELKLQKKEKEEELRNLEEEKAKKKKDANLKRK 134
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +1
Query: 412 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYE 585
+R+C+ + + + + +DL++ E S L+ QVNDL + K T +K+S+ +
Sbjct: 897 QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQ 953
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 379 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 498
+NI D++ED I ++ Y + A DE+ E+ + KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 659 FFFTTFNWLRKLNSAAFFWSLANLFSYLETFFSV 558
FFF T +L KLNS ++ L+++L SV
Sbjct: 148 FFFLTILFLSKLNSVPLNKKISYLYTFLLAIVSV 181
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 400 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 531
ED+ + D+H A E+EK + K ME+ ++N V+
Sbjct: 23 EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 477 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 355
+ +++ + K + M V +PL S F+ +N LRF + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 430 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 528
+HE I +L+D + +L +++K++ IS L V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,640
Number of Sequences: 5004
Number of extensions: 38666
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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