Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_G18
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   2.1  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    27   2.8  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    27   3.7  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    27   4.9  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   6.5  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   8.6  

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -3

Query: 813 PIACRSKASVSFPSSKCRSISAMGARRAL--NSIAITISRDNXVIVLLVFSIDLGMTSNW 640
           P+ C S     F  + CR+I   G    +  N   I ++ D+ VIV     I+  +TS +
Sbjct: 216 PVNCNSALRTPFGGATCRNIGYKGQGICVYTNDSRIPVA-DDHVIVNTTSKINPNITSVF 274

Query: 639 NY 634
           NY
Sbjct: 275 NY 276


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 562 KIGEGVYGEVF-LWRARDGRARVMKIVPIAGHTKVNG 669
           K+GEG +GEV+   R +DG+   +K   I  HT+  G
Sbjct: 41  KLGEGTFGEVYKSQRRKDGKVYALK--RILMHTEKEG 75


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -3

Query: 348 VLQGKMHALGFGHF*RNKKPSKKTYYPVTDNGSHSNFVFVKSLFTIHTIIVVFFNVY 178
           +L G++ AL  G+  +NK  +K TY  +  +  H     V + F + ++ ++FF  Y
Sbjct: 247 ILSGQVPAL-MGY--KNKVTAKATYMVIIQSLKHLPDTTVDAAFGLVSLFILFFTKY 300


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 562 KIGEGVYGEVFLWRARDGRARV 627
           K+GEG Y  VFL R ++   RV
Sbjct: 16  KVGEGTYAVVFLGRQKETNRRV 37


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 645 NWNYFHYSSSAISSTPK 595
           +WN+F+Y++SAI S  K
Sbjct: 493 DWNFFNYNNSAIDSYAK 509


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 505 TDAILFDECYPDALLKNCHKIGEGVYGEV 591
           T  + F+E Y +A +   HK GE +Y  V
Sbjct: 41  TSQLSFEELYRNAYILVLHKYGEKLYNHV 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,785
Number of Sequences: 5004
Number of extensions: 66627
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)