Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_G09
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    87   3e-18
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    86   8e-18
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   4.9  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   8.5  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 38/65 (58%), Positives = 44/65 (67%)
 Frame = +1

Query: 139 RRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFK 318
           RRCG+ S+HIQKS CA CGYPAAK RSY+W  KA          M +LK V R F+NGF+
Sbjct: 20  RRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFR 79

Query: 319 EGKPT 333
            GKPT
Sbjct: 80  AGKPT 84



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 99  SFGKRRNKTHTLCTK 143
           SFG R NK+HT+C +
Sbjct: 7   SFGMRHNKSHTICRR 21


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 85.8 bits (203), Expect = 8e-18
 Identities = 39/72 (54%), Positives = 45/72 (62%)
 Frame = +1

Query: 139 RRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFK 318
           RRCG+ S+HIQKS CA CGYPAAK RSY+W  KA          M +LK V R F+NGF+
Sbjct: 20  RRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFR 79

Query: 319 EGKPTPPKKAVA 354
            GKP     A A
Sbjct: 80  SGKPAAAVAASA 91



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 99  SFGKRRNKTHTLCTK 143
           SFG R NK+HT+C +
Sbjct: 7   SFGMRHNKSHTICRR 21


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 290 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 177
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/67 (25%), Positives = 24/67 (35%)
 Frame = +1

Query: 28  SGIPLRFCFPDLSTSDXDDEGYPQASVSAEIRPIRYARRCGRSSYHIQKSKCAQCGYPAA 207
           S +PL     +      DD+      V  E  P    R    SS  +   K +QC +  A
Sbjct: 132 SNVPLNEVLKEHRKRREDDKNAIMTMVVREASPFHRTRARTESSVFVIDKKTSQCVHYQA 191

Query: 208 KLRSYHW 228
             R  H+
Sbjct: 192 NERGKHY 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,286
Number of Sequences: 5004
Number of extensions: 42592
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)