Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_G07
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   3.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   3.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.4 bits (48), Expect(2) = 3.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 505 PGRPXPXXPPPPPP 464
           P  P    PPPPPP
Sbjct: 753 PPAPIMGGPPPPPP 766



 Score = 21.8 bits (44), Expect(2) = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 481 PPPPPPRA 458
           PPPPPP A
Sbjct: 777 PPPPPPPA 784


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 3.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 505 PGRPXPXXPPPPPP 464
           P    P  PPPPPP
Sbjct: 184 PSDYNPPPPPPPPP 197



 Score = 21.8 bits (44), Expect(2) = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 481 PPPPPPRA 458
           PPPPPP A
Sbjct: 191 PPPPPPPA 198


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 505 PGRPXPXXPPPPPP 464
           PG   P  PPPPPP
Sbjct: 16  PGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.150    0.542 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,083,630
Number of Sequences: 5004
Number of extensions: 9823
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)