Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_G02
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   1.1  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   1.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    28   1.9  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   2.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   4.4  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   5.8  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   5.8  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   7.6  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   7.6  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -3

Query: 680  SLVNAILSCGFRINEAMLHLCYVNFLQHFHIHKHFRVY 567
            ++++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 926  TVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -1

Query: 271 RYHSLCQFYNIHHQ--CLVGSHLG 206
           +Y++ C FYNI H   C  G  LG
Sbjct: 35  KYYNFCPFYNIQHNYTCQTGDPLG 58


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 823 STRTVNESGSSSSKRSCQYPQ*SMSAFVLH 734
           +T TV+ESGSSS+  +  YP  ++S    H
Sbjct: 592 TTSTVSESGSSSASITSTYPSSTLSMTTSH 621


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 184 QKKILSFFQDVSQLNTDDEYYKIGKDY-DIEMNMDNYTNKKAVEEFLKMYRTGFMP 348
           + K+     D + L  DD      KD+ ++ +N  +Y NK  ++ F  + +  F P
Sbjct: 617 EMKLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKP 672


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +1

Query: 358  EFSVFYDKMRDEAIALFHLFYYAKDFETFYKSACFARVHLNQGQFLYAFYIAVIQRPXLP 537
            +F+V ++   +    LF + + ++     Y     +   L +G++LY F +  +    L 
Sbjct: 899  DFAVPHNMYDNGFNGLFFMVFDSQKQRVHYGDMYTSSHTLEKGEYLYKFQLLSVDPSTLE 958

Query: 538  RFRCSWLRM 564
            RFR   LR+
Sbjct: 959  RFRNVTLRL 967


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 763 EDIGMNAYYYYFHSHLPFWWTSEKYG 840
           +DIGM AY       L F W S+++G
Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG 143


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 573 GILHTEPGTTKPWQXRALDNSDVEGIQELTLIEMHTRKTGTLVERFKV 430
           GI++ +P + K      +D+  V+ + E   + ++TRK   +V+  KV
Sbjct: 272 GIIYKDPASLKHEGDLLIDSKVVQTVLERATLLVYTRKQQHIVKNTKV 319


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 196 LSFF--QDVSQLNTDDEYYKIGKDYDIEMNMDN 288
           L+FF  Q+V Q+N +DEY +   + D E  +DN
Sbjct: 49  LNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 555 PGTTKPWQXRALDNSDVEGIQELTLIE 475
           PGT  PW  +A + ++V G +++  IE
Sbjct: 76  PGTISPWSSKATNIANVCGYKDVIRIE 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,308,786
Number of Sequences: 5004
Number of extensions: 66442
Number of successful extensions: 214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)