Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_F23
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...   155   8e-39
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    35   0.014
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    32   0.097
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    31   0.22 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    30   0.39 
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    30   0.52 
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    29   1.2  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    26   6.3  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   8.4  

>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score =  155 bits (376), Expect = 8e-39
 Identities = 77/159 (48%), Positives = 101/159 (63%), Gaps = 5/159 (3%)
 Frame = +1

Query: 166 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 345
           + +A     K TLP LPY YNALEP +S  IM LHH KHH TY+NNLN A+EKLA     
Sbjct: 16  VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL- 74

Query: 346 GDIDTIINLAPALKFNGGGHINHSIFWHNLSP---NGGKP--SDVLTKAVEKDFGSWDNI 510
            D++  + L  A+KFNGGGHINHS+FW  L+P    GGKP  S  L KA+   +GS ++ 
Sbjct: 75  -DLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133

Query: 511 KNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPL 627
           + +++ A  ++QGSGW WL  +K    L+I T  NQD +
Sbjct: 134 QKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTI 171



 Score = 34.3 bits (75), Expect = 0.024
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 650 PLFGIDVWEHAYYLQLQER 706
           P+ GID WEHAYY Q + R
Sbjct: 176 PIIGIDAWEHAYYPQYENR 194



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 696 YKNVRADYVKAIFDVAXWNDISXRY 770
           Y+N +A+Y KAI++V  W +   RY
Sbjct: 191 YENRKAEYFKAIWNVINWKEAESRY 215


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = +1

Query: 406 INHSIFWHNL-SPNG-GKPSDV----LTKAVEKDFGSWDNIKNQLSTASVAVQGSGWGWL 567
           +NH  F+  L SP      +D+    L   ++  FGS+  +K+Q+     +V G GW WL
Sbjct: 76  VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135

Query: 568 GYNKQMKKLQIATCQN 615
            Y+ +     +    N
Sbjct: 136 VYSPEKSLFSLLCTYN 151


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 31/110 (28%), Positives = 47/110 (42%)
 Frame = +1

Query: 187 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 366
           RQKHT P  P   +A          S HH  HH+   N L    EK      K + ++  
Sbjct: 97  RQKHTAPATPIPVSA----------SRHHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142

Query: 367 NLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNIKN 516
           + +P+  F  G  IN+ I   N S +   P +  +  + K   S+ ++KN
Sbjct: 143 SESPSKGF--GSFINNHILHKNTSSHPSSPVNGKSSDIHKS-QSYQHLKN 189


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 13/162 (8%)
 Frame = +1

Query: 196 HTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIIN 369
           HT+P L  + N L P+ S E + +   +H    +  LN  V   +L  +     I     
Sbjct: 39  HTVPNLS-QRNLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96

Query: 370 L---APALKFNGGGHINHSIFWHNLSPNGG--------KPSDVLTKAVEKDFGSWDNIKN 516
           L   A   +F    + NH  F   +             + +  + KAV ++FGS +N+ +
Sbjct: 97  LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156

Query: 517 QLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLAGHHW 642
           ++   +    G+ W W+  +   +   + T Q   P     W
Sbjct: 157 KIHELASNSFGACWLWIVIDDYNRLNLLRTFQAGSPYLWTRW 198



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 647 VPLFGIDVWEHAYYLQ--LQERSCRLRESYFRC 739
           VP+  + +W HAYY    L  RS R  +++F C
Sbjct: 222 VPILNLCLWNHAYYKDYGLLNRS-RYIDTWFDC 253


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 609 PEPGSSGRPPLDWSRSSESMYGSTRTIFSYKNVRADYVKAIFDVA 743
           P    S +PPL WS SS +++G+++      N  +D V  +   A
Sbjct: 94  PVRNMSNKPPLTWSPSSANLFGTSKVTSIIGNNVSDVVPPVIKKA 138


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 277 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 450
           K+HA           K+ QA  K   D  +N+A  + ++N     N+ +FW  +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 637 GGLPEDPGSGM*LFAISSFVCCSQANPSLSPVLPQKLSTVD 515
           G LPED GSG+  F +  +V     NP+++  +   + +V+
Sbjct: 656 GALPEDEGSGVDNFRVKRYVSKYTINPAITHGISHIVGSVE 696


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 585 EEIANSYMPEPGSSGRPPLDWSRSSESMYGSTRTIFSY 698
           +E+ N      G    PP  W      +YG + T +SY
Sbjct: 649 DEVTNVTRKFSGFESAPPAAWYLQFSHLYGYSATYYSY 686


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 375 CKVDNGVDITFSLCLCEFLFSNV 307
           C VD+  +I+ SLC  EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,436,950
Number of Sequences: 5004
Number of extensions: 71596
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)