Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_F23
(901 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 128 8e-30
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 85 7e-17
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 71 1e-12
02_01_0005 + 34436-34498,34578-35120,35566-35643,35823-35915,360... 30 2.2
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 30 2.9
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 30 2.9
06_01_0286 - 2094920-2097805 29 3.8
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 29 6.7
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 128 bits (308), Expect = 8e-30
Identities = 78/184 (42%), Positives = 100/184 (54%), Gaps = 30/184 (16%)
Frame = +1
Query: 166 IRVAGASRQKHT--LPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQ 339
+ A A+R T LP+LPY+Y ALEP IS EIM LHH KHHATY+ N N A E+L A
Sbjct: 19 LAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAV 78
Query: 340 AKGDIDTIINLAPALKFNGGGHINH------------SIFW--------------HNLSP 441
AKGD I++L A+KFNGGG S F+ L
Sbjct: 79 AKGDAPAIVHLQSAIKFNGGGEAKSRPPYPFLAYGFLSFFFFVLFIAGDAGGGGSEELGG 138
Query: 442 NGG--KPSDVLTKAVEKDFGSWDNIKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQN 615
GG P L A+++DFGS++ + ++S A+QGSGW WL +K+ KKL + T N
Sbjct: 139 EGGGDPPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTAN 198
Query: 616 QDPL 627
QDPL
Sbjct: 199 QDPL 202
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 644 LVPLFGIDVWEHAYYLQ 694
LVPL GIDVWEHAYYLQ
Sbjct: 209 LVPLLGIDVWEHAYYLQ 225
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 696 YKNVRADYVKAIFDVAXWNDISXRYEKA 779
YKNVR DY+ I+ V W YE A
Sbjct: 226 YKNVRPDYLSNIWKVMNWKYAGEVYENA 253
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 85.0 bits (201), Expect = 7e-17
Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 9/149 (6%)
Frame = +1
Query: 211 LPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKG-DIDTIINLA---- 375
L + +ALEP IS+ + LH KH Y+++LN ++LA + G ++ +I A
Sbjct: 73 LVFTTDALEPYISKRTVELHWGKHQQDYVDSLN---KQLATSMFYGYTLEELIKEAYNNG 129
Query: 376 -PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNIKNQLSTASVAVQ 546
P ++N + NH FW ++ P GG P + + +EKDFGS+ N + + +++++
Sbjct: 130 NPLPEYNNAAQVWNHHFFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSLL 189
Query: 547 GSGWGWLGYNKQMKKLQIATCQNQ-DPLA 630
GSGW WL ++ +K + QN PLA
Sbjct: 190 GSGWVWLVLKRKERKFSVVHTQNAISPLA 218
Score = 32.3 bits (70), Expect = 0.54
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 644 LVPLFGIDVWEHAYYLQLQE 703
L PL +D+WEHAYYL ++
Sbjct: 241 LQPLINLDLWEHAYYLDYKD 260
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 70.9 bits (166), Expect = 1e-12
Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Frame = +1
Query: 211 LPYEYNALEPVISREIMSLHHSKHHATYINNLNV----AE-EKLAQAQAKGDIDTIINLA 375
LPY +ALEP IS+E + H H ++ LN +E E ++ Q A
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188
Query: 376 PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNIKNQLSTASVAVQG 549
P F I NH +W ++ P GG KP + L K + +DFGS+D + Q A+ G
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAASTQFG 248
Query: 550 SGWGWLGY 573
SGW WL Y
Sbjct: 249 SGWVWLCY 256
>02_01_0005 +
34436-34498,34578-35120,35566-35643,35823-35915,
36086-36181,36709-36762,36856-37059,37209-37360,
37365-37440,38185-38193,38577-38708,39042-39107,
39885-40184,40332-40640,40976-40996
Length = 731
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 442 NGGKPSDVLTKAVEKDFGSWDNIKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQD 621
+G +P + V++ + + QL + V SGW + ++ +KKL A Q+
Sbjct: 110 SGRRPVAMAVGTVDRHYAHAPSPSKQL----LVVVTSGWSVMCFDHNLKKLWEANLQDDF 165
Query: 622 PLAGHH 639
P A HH
Sbjct: 166 PHAAHH 171
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +3
Query: 522 VDSFCGSTGLRLGLAWLQQTNEEIANSYMPEPGS----SGRPPLDWSRSSES 665
VD GS GL+ + L QT EE+A +++ + S RP + +S ES
Sbjct: 2 VDKNDGSEGLKFNTSHLMQTTEEVARAFIAAASAATVQSTRPSVVYSSREES 53
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 375 CKVDNGVDITFSLCLCEFLFSNV*IVDISRVMFAVMKTHDFTAND 241
C VD V + + CEF V + DISR++F K +F ND
Sbjct: 108 CTVDGHVKL-YRSPFCEFCDEWVEVADISRLLFKFYKGIEFGEND 151
>06_01_0286 - 2094920-2097805
Length = 961
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 199 TLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 366
+L L +N L +I + SLH H NNL+ + +Q Q GD D I
Sbjct: 807 SLESLDLSWNRLSGIIPESMTSLHLLSHLNMSYNNLSGMVPQGSQLQTLGDEDPYI 862
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3
Query: 821 LNWXNRFF*NYSLERFFISXRYIIPV 744
+ W +RFF + L+R+FIS R +IP+
Sbjct: 108 VRWLSRFF--FYLDRYFISRRSLIPL 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,767,687
Number of Sequences: 37544
Number of extensions: 512699
Number of successful extensions: 1448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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