Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_F22
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.5
U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical p... 29 3.4
Z68219-8|CAD59155.1| 430|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z68219-1|CAA92481.2| 387|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z68216-7|CAD59147.1| 430|Caenorhabditis elegans Hypothetical pr... 29 4.4
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern... 29 4.4
Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 5.9
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 346 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 495
Q +G G GG+ N GG +N Q T + N GG G+TASG G
Sbjct: 160 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 209
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 346 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 495
Q +G G GG+ N GG +N Q T + N GG G+TASG G
Sbjct: 181 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 230
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 346 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 495
Q +G G GG+ N GG +N Q T + N GG G+TASG G
Sbjct: 166 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 215
>U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical
protein C32D5.11 protein.
Length = 770
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 299 PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGCRLEGC 189
P P SPS+ + L ICLS S+ CR+EGC
Sbjct: 50 PVIP-SPSTSSNNPVEELQCTICLSTRFSQECRIEGC 85
>Z68219-8|CAD59155.1| 430|Caenorhabditis elegans Hypothetical
protein T05A1.1a protein.
Length = 430
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +2
Query: 578 DSKQRSAMIGDHLNTYTIICCQICLSLF----HNVIR**DLVLCYDG 706
++KQR A++ T TI+ C + L F HNV+ L++ YDG
Sbjct: 302 ENKQRLAVLAQQRRTTTILSCMVLLFAFTWLPHNVV---TLMIEYDG 345
>Z68219-1|CAA92481.2| 387|Caenorhabditis elegans Hypothetical
protein T05A1.1b protein.
Length = 387
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +2
Query: 578 DSKQRSAMIGDHLNTYTIICCQICLSLF----HNVIR**DLVLCYDG 706
++KQR A++ T TI+ C + L F HNV+ L++ YDG
Sbjct: 259 ENKQRLAVLAQQRRTTTILSCMVLLFAFTWLPHNVV---TLMIEYDG 302
>Z68216-7|CAD59147.1| 430|Caenorhabditis elegans Hypothetical
protein T05A1.1a protein.
Length = 430
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +2
Query: 578 DSKQRSAMIGDHLNTYTIICCQICLSLF----HNVIR**DLVLCYDG 706
++KQR A++ T TI+ C + L F HNV+ L++ YDG
Sbjct: 302 ENKQRLAVLAQQRRTTTILSCMVLLFAFTWLPHNVV---TLMIEYDG 345
>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
(werner's syndrome) relatedprotein 1 protein.
Length = 1056
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -2
Query: 318 KDLSVVTSFSKESIIVLSQSAKDLASP-HLFVPSDVTRVSP*GLPPDRIIFCVIKRSVN 145
K L TSF ++++ + S+KD+A LF+ +D + G P II+C K+ V+
Sbjct: 404 KPLITTTSFDRKNLYISVHSSKDMAEDLGLFMKTDEVKGRHFGGP--TIIYCQTKQMVD 460
>Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical
protein F13E9.4 protein.
Length = 409
Score = 28.7 bits (61), Expect = 5.9
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +1
Query: 265 GQNDDGLFG--KAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQAT 438
GQN + G + GY D G Q G V G GG S +YG + + Q
Sbjct: 69 GQNQGSMQGYSQQGYGGNS-QQDYGYSQSQGSGMGVQGYGGSSQSYGQQAFAQQQRPQQG 127
Query: 439 IDLNRQIGGRSGMTASGS 492
N G SG ASGS
Sbjct: 128 FQSN----GFSGQQASGS 141
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +1
Query: 238 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGG 402
GGG G G DG +G G+ G + G YG +G GG YGG
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGG 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,289,151
Number of Sequences: 27780
Number of extensions: 416409
Number of successful extensions: 1168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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