Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_F19
         (948 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.65 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 944 EXGGGGGGGXXGGXXGGGG 888
           + GGG GGG  G    GGG
Sbjct: 90  DSGGGRGGGRDGDRGDGGG 108



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 781 GGGXQGGXGXGGG 743
           GGG  G  G GGG
Sbjct: 96  GGGRDGDRGDGGG 108


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 919 PPPPPPP 939
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 889 PPPPXXPPXXPPPPPPP 939
           PP P  PP   PP  PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 747 PPXPXPPXXPP 779
           PP P PP  PP
Sbjct: 181 PPLPLPPIFPP 191



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 862 PPXAPXPXSPPPPXXPP 912
           PP    P  P PP  PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,878
Number of Sequences: 336
Number of extensions: 2528
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26685714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)