Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_F19
         (948 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.14 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.19 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.33 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   5.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = +1

Query: 865 PXAPXPXSPP-PPXXPPXXPPPPPPP 939
           P AP   SPP P   PP   PP  PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 27.5 bits (58), Expect = 0.19
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 874 PXPXSPPPPXXPPXXPPPPPP 936
           P P   PPP  PP  PP   P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +1

Query: 859 GPPXAPXPXSPPPPXXPPXXPPPPPPP 939
           GP  +P      P    P  P   PPP
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 879 PXXXPXPRASPXXPAXXAPP 938
           P   P P  SP  P   +PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPP 40


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.19
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 919  PPPPPPPXSG 948
            PPPPPPP SG
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 25.0 bits (52), Expect = 1.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 919  PPPPPPPXS 945
            PPPPPPP S
Sbjct: 1355 PPPPPPPPS 1363


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.33
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 907 PPXXPPPPPPPXS 945
           PP   PPPPPP S
Sbjct: 338 PPKPAPPPPPPSS 350



 Score = 25.8 bits (54), Expect = 0.57
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 907 PPXXPPPPPPPXSG 948
           P   PPPPPP  SG
Sbjct: 339 PKPAPPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 747 PPXPXPPXXPP 779
           PP P PP  PP
Sbjct: 338 PPKPAPPPPPP 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -2

Query: 752 GGGGXXRGGGXPPPXXGGGXGXXAXGGGGAXG 657
           GG G    GG      GG     A  GGG  G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -2

Query: 935 GGGGGGXXGGXXGGGGXXGXGAXGG 861
           G  GG    G   GGG  G G   G
Sbjct: 33  GASGGSIVVGANNGGGGGGLGIASG 57


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 907 PPXXPPPPPPPXSG 948
           PP   PPPP   SG
Sbjct: 660 PPDSDPPPPDDISG 673


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,573
Number of Sequences: 438
Number of extensions: 6546
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)