Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_F17
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 49 4e-06
04_03_0111 - 11361954-11363510 33 0.40
06_01_0080 + 644021-645463 30 2.2
04_03_0515 + 16698589-16701066 29 5.0
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 29 6.6
05_05_0252 - 23621592-23621912,23621958-23622317,23622979-236230... 29 6.6
01_06_1543 - 38138253-38138855,38139000-38139239 29 6.6
01_06_0663 - 30991390-30992340 29 6.6
05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571 28 8.7
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 49.2 bits (112), Expect = 4e-06
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Frame = +1
Query: 130 IGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDG-LLRGELK 306
+G++G+G +G A L A+ G V + D ++ A++ I L L G L + +
Sbjct: 13 VGVIGAGQMGSGIAQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLVAKGQLSQASCE 72
Query: 307 AS-EQFQCIKGSTDLATAVKGAVFVQECVPENLDLKKKVFQNLDSVVDDNTI 459
S EQ +C+ +L + A V E + E+ D+KKK+F LD + + I
Sbjct: 73 HSIEQIKCVSSVQEL----RDADLVIEAIVESEDIKKKLFVELDKITKPSAI 120
>04_03_0111 - 11361954-11363510
Length = 518
Score = 32.7 bits (71), Expect = 0.40
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 512 NISLRSLFLIR*-IHLITYPLXEIVPAPWTKPEVAKKTREIMEEIGQQP 655
N+ + L ++R +++ TYP+ ++ AP PE AKKT I+E + +QP
Sbjct: 240 NLEPKGLSMLRQWLNVPTYPVGPLLRAPAPSPE-AKKTSPILEWLDEQP 287
>06_01_0080 + 644021-645463
Length = 480
Score = 30.3 bits (65), Expect = 2.2
Identities = 10/45 (22%), Positives = 27/45 (60%)
Frame = +1
Query: 127 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 261
+IG+ G ++G++ A+ A G+ ++VY+ ++ + ++ K +
Sbjct: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVE 49
>04_03_0515 + 16698589-16701066
Length = 825
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 478 YLLNLIISCYRQLRCRDSGTPFF 410
Y N++I+CYR+ R D G P F
Sbjct: 190 YTYNILINCYRRARRPDLGLPVF 212
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 578 IVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLN 694
++PAPW K K +E + ++GQ + + I+G +N
Sbjct: 504 VLPAPWLKYHDTGKEKECLPQVGQWNMVNKKVINGCKVN 542
>05_05_0252 -
23621592-23621912,23621958-23622317,23622979-23623059,
23623262-23623633
Length = 377
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 578 IVPAPWTKPEVAKKTREIMEEIGQQPVSLT 667
IVPAPW++P K + I+++ G+ + T
Sbjct: 282 IVPAPWSRPLSEKVIKAILKDNGETKTTTT 311
>01_06_1543 - 38138253-38138855,38139000-38139239
Length = 280
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 584 PAPWTKPEVAKKTREIMEEIGQQPV 658
PAP P+VAKK +E++E+ G PV
Sbjct: 84 PAPGA-PDVAKKAKELLEQAGFGPV 107
>01_06_0663 - 30991390-30992340
Length = 316
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 127 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQ 228
++ VG+G++G+S A + GY +TVY+ A +
Sbjct: 21 RVAWVGTGVMGQSMAGHLLAAGYALTVYNRTASK 54
>05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571
Length = 527
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +1
Query: 85 VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQL 264
V+ST +A +K+ ++G+G IG ++ +G +VTV + + + +I+ Q
Sbjct: 222 VSSTGALALSEIPKKLVVIGAGYIGLEMGSVWNRLGSEVTVVEFASDIVPSMDGEIRKQF 281
Query: 265 HTL 273
+
Sbjct: 282 QRM 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,237,859
Number of Sequences: 37544
Number of extensions: 446974
Number of successful extensions: 1172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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