Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_F13
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   3.2  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   5.7  

>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/73 (28%), Positives = 25/73 (34%)
 Frame = +1

Query: 646 CALPVXDPXRLPDTCPXFLPSGSVALSHXSXCXYLXPVYVVXPXPXLCAEPPXXPDXCPX 825
           C  P+  P R+P   P  +P           C    P     P P +C  PP  P  CP 
Sbjct: 30  CPTPMCQP-RMPCAAPMPMPMPMPVCPPPPPC----PAQFCPPPP-ICPPPPPPPMPCPP 83

Query: 826 PXTXXLSPXPXTP 864
           P      P P  P
Sbjct: 84  PPPP--MPRPSCP 94


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
 Frame = +1

Query: 715 VALSHXSXCXYLXPVYVVXPXPXLCAEPP--------XXPDXCPXPXTXXLSPXPXTP 864
           +A S    C  + P     P P +CA PP          P  CP P      P P  P
Sbjct: 14  IASSTFGGCCSMGPPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPP 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,640,444
Number of Sequences: 27780
Number of extensions: 319783
Number of successful extensions: 713
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)