Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_F13
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   2.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 569 STLKSEVAKPDRTIKIPXVSPWKLPRALSLXPTLXAYRIPVPP 697
           S++  +VA   R   IP +SP    +ALS       +   VPP
Sbjct: 79  SSVSLQVANLLRLFHIPQISPASTAKALSDKTRFDYFARTVPP 121


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 569 STLKSEVAKPDRTIKIPXVSPWKLPRALSLXPTLXAYRIPVPP 697
           S++  +VA   R   IP +SP    +ALS       +   VPP
Sbjct: 169 SSVSLQVANLLRLFHIPQISPASTAKALSDKTRFDYFARTVPP 211


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 615 YXXFPPGSSLVRSPCXRPXPLTGYLSXLSPFXKR 716
           Y   PP  +   +P   P PLTG    L  F KR
Sbjct: 210 YTACPPTLACPLNP--NPQPLTGQQELLQDFSKR 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,900
Number of Sequences: 438
Number of extensions: 4956
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)