Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_F07
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...   105   8e-24
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    82   1e-16
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    27   2.6  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    27   4.5  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    27   4.5  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    27   4.5  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    26   6.0  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    26   7.9  

>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score =  105 bits (252), Expect = 8e-24
 Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
 Frame = +1

Query: 178 DNLQRIREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKE 357
           D+L  + E+  +     + +  +  R  ++L KGL+    D   V  WI      P+G E
Sbjct: 29  DHLDELEEQFTI---PTELLHRVTDRFVSELYKGLTTNPGDVPMVPTWII---GTPDGNE 82

Query: 358 RGKFLALDLGGTNFRVLIINL-GENHFDMQSKIYAIPKHIMTGTGIALFDHIAECLANFM 534
            G +LALDLGGTN RV  + + G   FD+    Y +P+ +  GT  ALFD+IA+C+  F+
Sbjct: 83  HGSYLALDLGGTNLRVCAVEVQGNGKFDITQSKYRLPQELKVGTREALFDYIADCIKKFV 142

Query: 535 KE-HGVYEERLALGFTFSFPLKQLGLTKGVLQRWTKGF 645
           +E H    + L +GFTFS+P  Q  +    L  WTKGF
Sbjct: 143 EEVHPGKSQNLEIGFTFSYPCVQRSINDASLVAWTKGF 180


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
 Frame = +1

Query: 328 YIQDLPNGKERGKFLALDLGGTNFRVLIINL-GENHFDMQSKIYAIPKHIMTGTGIA-LF 501
           +I  LP G E G FLALD GGTN RV  I L G+  ++M+     +P+  +    +  + 
Sbjct: 51  FISTLPTGAETGDFLALDFGGTNLRVCWIQLLGDGKYEMKHSKSVLPRECVRNESVKPII 110

Query: 502 DHIAECLANFMKEH-----GVYEER-LALGFTFSFPLKQLGLTKGVLQRWTKGFS 648
           D +++ +  F+KEH     G  EE  L +GFTFS+P  Q+ +T+  L RWTKG +
Sbjct: 111 DFMSDHVELFIKEHFPSKFGCPEEEYLPMGFTFSYPANQVSITESYLLRWTKGLN 165


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 194 ILCKLSTTMPIFYRYFPYLTPIGN 123
           ILC   T   I +RYFP+L  +G+
Sbjct: 233 ILCYFGTYSHIAFRYFPWLPHVGD 256


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 193 IREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQD 339
           IR++    +M D    E + RL   L + + R + D  +++C + YI++
Sbjct: 259 IRQQYPDTEMCDLYGVEHLIRLFVSLPELIDRTNMDSQSIECLLNYIEE 307


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
 Frame = +1

Query: 385 GGTNFRVLIINLGENHFDMQSKIYAIPKHIMTGTGIALFD---HIAECLA----NFMKEH 543
           G     +L   +G++     S I    K I  GTGI++FD   +I  C      +F K+H
Sbjct: 300 GSGKTTLLAYVVGDHPKLFASNIKFFGKSIGPGTGISIFDIQENIGHCSPEIHNHFPKQH 359

Query: 544 GVYEERL-ALGFTFSFP 591
             +E  L A   TF+ P
Sbjct: 360 TCFEALLSAWSTTFTIP 376


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 229 KQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPN 348
           ++IK+++  L   +K GL+ +DH    + C++  I D P+
Sbjct: 433 QEIKQLIRLLEELIKTGLATSDHRLLLLSCYVE-IHDSPS 471


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 668 RRPHRKQEKPLVHLCNTPFVRPSCFSGKLNVNPSAN 561
           R P   Q + ++ + ++PFV PS  S K+++ PS N
Sbjct: 195 REPKNLQSQEVMDIDSSPFVSPSPISMKMDM-PSLN 229


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 766 HKGAGGIIKYAHHIYKNVPSSGDSIFKALYNIFADHTG 653
           HK   GI+K  H  + ++P   +   K  + IF    G
Sbjct: 155 HKNVSGIVKATHFAFADIPEKSEYTLKQ-WRIFEKAAG 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,308,283
Number of Sequences: 5004
Number of extensions: 68844
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)