Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_F07
(863 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical pr... 160 1e-39
Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical pr... 155 3e-38
Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical pr... 118 4e-27
AC024214-19|AAF36071.1| 451|Caenorhabditis elegans Hypothetical... 99 4e-21
Z35719-4|CAA84798.1| 279|Caenorhabditis elegans Hypothetical pr... 30 2.4
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 30 2.4
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 30 2.4
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 30 2.4
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 29 3.2
Z74042-10|CAA98524.1| 307|Caenorhabditis elegans Hypothetical p... 29 4.3
>Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical
protein F14B4.2b protein.
Length = 495
Score = 160 bits (389), Expect = 1e-39
Identities = 82/160 (51%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Frame = +1
Query: 169 IVVDNLQRIREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPN 348
I V N Q I+E C+ L ++D+Q++ IM + +++GL+ + K VK TY+ +PN
Sbjct: 26 IDVSNNQMIQEACQRLVLSDQQLRRIMQSMEKSMEQGLATSTK-KVAVKMLPTYVDSVPN 84
Query: 349 GKERGKFLALDLGGTNFRVLIINLGENHFDMQSKIYAIPKHIMTGTGIALFDHIAECLAN 528
G E G FLALDLGGTNFRVL I L M KI+ +P+ IM GTG ALFDHIA C+A
Sbjct: 85 GTESGDFLALDLGGTNFRVLHIKLQGKETKMTGKIFRVPESIMRGTGEALFDHIAGCMAK 144
Query: 529 FMKEHGVYE-ERLALGFTFSFPLKQLGLTKGVLQRWTKGF 645
FM E+ + + ++L LGFTFSFP +Q GLTKG L WTKGF
Sbjct: 145 FMGENDLKDAQKLPLGFTFSFPCEQEGLTKGKLVTWTKGF 184
Score = 44.8 bits (101), Expect = 8e-05
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +2
Query: 671 DVVQGLKDAIARRGDVFIDVMGILNDATGALMSXCP*XPKLPNXRIIXTGXNACYVXK 844
DVV L +A RR D+ IDV+ +LND G LM+ I+ TG NACY+ +
Sbjct: 193 DVVTLLHEACHRRKDIDIDVVALLNDTVGTLMACAFQENSCQIGVIVGTGTNACYMER 250
>Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical
protein F14B4.2a protein.
Length = 500
Score = 155 bits (377), Expect = 3e-38
Identities = 78/152 (51%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Frame = +1
Query: 193 IREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKERGKFL 372
I+E C+ L ++D+Q++ IM + +++GL+ + K VK TY+ +PNG E G FL
Sbjct: 39 IQEACQRLVLSDQQLRRIMQSMEKSMEQGLATSTK-KVAVKMLPTYVDSVPNGTESGDFL 97
Query: 373 ALDLGGTNFRVLIINLGENHFDMQSKIYAIPKHIMTGTGIALFDHIAECLANFMKEHGVY 552
ALDLGGTNFRVL I L M KI+ +P+ IM GTG ALFDHIA C+A FM E+ +
Sbjct: 98 ALDLGGTNFRVLHIKLQGKETKMTGKIFRVPESIMRGTGEALFDHIAGCMAKFMGENDLK 157
Query: 553 E-ERLALGFTFSFPLKQLGLTKGVLQRWTKGF 645
+ ++L LGFTFSFP +Q GLTKG L WTKGF
Sbjct: 158 DAQKLPLGFTFSFPCEQEGLTKGKLVTWTKGF 189
Score = 44.8 bits (101), Expect = 8e-05
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +2
Query: 671 DVVQGLKDAIARRGDVFIDVMGILNDATGALMSXCP*XPKLPNXRIIXTGXNACYVXK 844
DVV L +A RR D+ IDV+ +LND G LM+ I+ TG NACY+ +
Sbjct: 198 DVVTLLHEACHRRKDIDIDVVALLNDTVGTLMACAFQENSCQIGVIVGTGTNACYMER 255
>Z92797-1|CAB07234.1| 552|Caenorhabditis elegans Hypothetical
protein H25P06.1 protein.
Length = 552
Score = 118 bits (285), Expect = 4e-27
Identities = 59/144 (40%), Positives = 95/144 (65%), Gaps = 2/144 (1%)
Frame = +1
Query: 217 KMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKERGKFLALDLGGTN 396
K+++ ++ +M L +++ +GL + +++T+ +++ +LPNGKERGKF+A+DLGGTN
Sbjct: 55 KLSNTTLRRMMSHLSDNMDRGLE-SGLERSTIAMLPSFVPELPNGKERGKFVAMDLGGTN 113
Query: 397 FRVLIINLGENHFDMQSKIY--AIPKHIMTGTGIALFDHIAECLANFMKEHGVYEERLAL 570
RV+++ L E M++K + +P M GTG LFD+IA+ L +F+ E + +E L +
Sbjct: 114 LRVMLMEL-EPGEPMRTKQFNTRMPNAAMHGTGQKLFDYIAKALCDFLVERELADEHLPV 172
Query: 571 GFTFSFPLKQLGLTKGVLQRWTKG 642
GFTFS+P Q GL L RWTKG
Sbjct: 173 GFTFSYPCDQTGLRSATLLRWTKG 196
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 668 EDVVQGLKDAIARRGDVFIDVMGILNDATGALMSXC-P*XPKLPNXRIIXTGXNACYVXK 844
EDVVQ L+DAIAR G V ++++ ++ND G +++ II TG NA Y+
Sbjct: 205 EDVVQLLEDAIARDGRVKVNIVALINDTVGTMVAAAYEAGGHCDIGVIIGTGTNASYMED 264
Query: 845 QR 850
R
Sbjct: 265 SR 266
>AC024214-19|AAF36071.1| 451|Caenorhabditis elegans Hypothetical
protein Y77E11A.1 protein.
Length = 451
Score = 99.1 bits (236), Expect = 4e-21
Identities = 48/153 (31%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Frame = +1
Query: 193 IREECEVLKMTDKQIKEIMCRLHNDLKKGLSRADHDKATVKCWITYIQDLPNGKERGKFL 372
+ E ++ +Q++EI ++ +K GL++ +++ +Y+ LP+G E GK++
Sbjct: 8 VEEILAKFRLNREQLQEISEKVEQQMKMGLAKTQG--SSIAMLPSYVPALPDGTETGKYV 65
Query: 373 ALDLGGTNFRVLIINL-GENHFDMQSKI-YAIPKHIMTGTGIALFDHIAECLANFMKEHG 546
A+DL G N R++++ + G + Y + H+M GTG LF I CL F++E G
Sbjct: 66 AIDLSGKNLRIMLLTMNGAGTTPTHETVNYIVANHVMKGTGDQLFTFIVNCLQRFLQEFG 125
Query: 547 VYEERLALGFTFSFPLKQLGLTKGVLQRWTKGF 645
+ + L +GF FS+P + L + L WTKGF
Sbjct: 126 LVDANLPIGFVFSYPCELLSIRSARLLWWTKGF 158
>Z35719-4|CAA84798.1| 279|Caenorhabditis elegans Hypothetical
protein F17C8.6 protein.
Length = 279
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 508 IAECLANFM-KEHGVYEERLALGFTFSFPLKQLGLTKGVL 624
+ CL N K++ + ++G TF+FP Q LTKGV+
Sbjct: 130 LENCLKNIKAKQNNTLGKMSSIGSTFAFPQSQEVLTKGVV 169
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 508 IAECLANFM-KEHGVYEERLALGFTFSFPLKQLGLTKGVL 624
+ CL N K++ + ++G TF+FP Q LTKGV+
Sbjct: 1636 LENCLKNIKAKQNNTLGKMSSIGSTFAFPQSQEVLTKGVV 1675
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 508 IAECLANFM-KEHGVYEERLALGFTFSFPLKQLGLTKGVL 624
+ CL N K++ + ++G TF+FP Q LTKGV+
Sbjct: 1614 LENCLKNIKAKQNNTLGKMSSIGSTFAFPQSQEVLTKGVV 1653
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 508 IAECLANFM-KEHGVYEERLALGFTFSFPLKQLGLTKGVL 624
+ CL N K++ + ++G TF+FP Q LTKGV+
Sbjct: 1636 LENCLKNIKAKQNNTLGKMSSIGSTFAFPQSQEVLTKGVV 1675
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 190 RIREECEVLKMTDKQIKEIMCRLHNDL---KKGLSRADHDKATVKCWITY 330
++REEC L + ++ E L N++ +K + A+H + TV+ +TY
Sbjct: 365 KMREECTKLSVELDKLVENQINLRNEINHYRKLMENAEHLRTTVQTHVTY 414
>Z74042-10|CAA98524.1| 307|Caenorhabditis elegans Hypothetical
protein T11F9.11 protein.
Length = 307
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Frame = -2
Query: 229 CRSSLGLRILRESF--VNYQQLCPFFIDIFLT*RQ*GITLNTTSKF----TNYYTSCLYS 68
C S+ + IL + VN +CPFFID T G+T + F NY C+
Sbjct: 198 CHDSIAMEILAQKKYGVNTTLVCPFFID---TGMFHGVTTKCPALFPILEANYAVECIVE 254
Query: 67 KKMKNQXLKGIP 32
+ N+ L +P
Sbjct: 255 AILTNRPLLCMP 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,116,041
Number of Sequences: 27780
Number of extensions: 377604
Number of successful extensions: 912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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