Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_F05
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   133   3e-32
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   133   4e-32
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   3.6  
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    26   8.2  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  133 bits (322), Expect = 3e-32
 Identities = 64/98 (65%), Positives = 74/98 (75%)
 Frame = -1

Query: 475 IEKYYTRLTLDFDTNKRICEEIAIIPTKPXRNKIAGFATHLMRRXRHSQVRGXXIKLQEE 296
           IEKYY RLTLDF TNKRI +E+AII +K  RNKIAG+ THLM+R +   VRG   KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 295 ERERRDNYVPEVXAXEHDIIEVDPDTKDMLKMLDFNNI 182
           ERER+D YVPEV   E D I VD DTKDMLK L +++I
Sbjct: 77  ERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  133 bits (321), Expect = 4e-32
 Identities = 66/109 (60%), Positives = 79/109 (72%)
 Frame = -1

Query: 475 IEKYYTRLTLDFDTNKRICEEIAIIPTKPXRNKIAGFATHLMRRXRHSQVRGXXIKLQEE 296
           IEKYY RLTLDF TNKRI +E+AII +K  RNKIAG+ THLM+R +   VRG   KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 295 ERERRDNYVPEVXAXEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 149
           ERER+D YVPEV   E D + VD DTKDMLK L ++ I  +++  PA Q
Sbjct: 77  ERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 170 LQAINIVEVQHLQHILGVGVYFDDVMFXSXHFWDIVVTPLTLL 298
           L+  NI+E +++  +    +YF+  M  + +FW I   P  +L
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWML 410


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +1

Query: 601 MIRYIDEFGQTTTRMQ*KKCFICEICDAIALFVTIISCNKQVNNNNCIHFMF-QVQGEVW 777
           + R I E  +   R Q   C +CE CD  A +V ++      +    I     +V GE W
Sbjct: 46  LARGIREASKALDRRQAHLCVLCESCDQEA-YVKLVEALCAESETPLIKVADPKVLGE-W 103

Query: 778 XGFFCINESANXRGXAVC 831
            G   ++   N R    C
Sbjct: 104 AGLCVLDRDGNARKVVGC 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,523
Number of Sequences: 5004
Number of extensions: 45902
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)