Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_F05
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   129   3e-30
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    28   7.8  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  129 bits (311), Expect = 3e-30
 Identities = 62/99 (62%), Positives = 72/99 (72%), Gaps = 3/99 (3%)
 Frame = -1

Query: 475 IEKYYTRLTLDFDTNKRICEEIAIIPTKPXRNKIAGFATHLMRRXRHSQVRGXXIKLQEE 296
           IEKYYTR+T DF  NKR+C+E+AII +KP RNKIAG+ THLMRR     VRG  IKLQEE
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76

Query: 295 ERERRDNYVPEVXAXEHD---IIEVDPDTKDMLKMLDFN 188
           ERERRDNY+PE+   +      I+VD DT DMLK   FN
Sbjct: 77  ERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 393 SLLGIKLLDLPHI**GVSDT--RKCEEXXSNFRKRSVRGVTTMSQKC 259
           SL GI++  L     G S+T  RKCEE   +F    V+G+T  ++ C
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLC 683


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,854,782
Number of Sequences: 27780
Number of extensions: 259483
Number of successful extensions: 581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)