Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_F03
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   125   5e-29
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    31   1.5  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    29   6.1  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   8.1  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   8.1  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  125 bits (301), Expect = 5e-29
 Identities = 55/76 (72%), Positives = 66/76 (86%)
 Frame = +2

Query: 146 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 325
           IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VRGISIKLQEE
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76

Query: 326 ERERRDNYVPEVSALE 373
           ERERRDNY+PE+S ++
Sbjct: 77  ERERRDNYMPEISTVD 92


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 228 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCL 365
           SL GI++  L     G S+T  RKCEE L +F    V+G+T  ++ C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 246 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 386
           +L L H+      TRKCEE L +F ++ ++    +++K  L N+  S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 224 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 340
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 224 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 340
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,371,292
Number of Sequences: 27780
Number of extensions: 205120
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)