Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_F02
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    23   4.7  

>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 23.0 bits (47), Expect(2) = 4.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -3

Query: 174 IAPWARAMQAKRTTNLAAMMYCRETEC 94
           +  WA  + A    N+  + +C  TEC
Sbjct: 623 VKEWADFVPALNKKNIVMIPWCNTTEC 649



 Score = 21.8 bits (44), Expect(2) = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 72  CNTEECVKSLKE 37
           CNT EC K +K+
Sbjct: 644 CNTTECEKEIKK 655


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,587
Number of Sequences: 5004
Number of extensions: 32005
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)