Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_F02
(905 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processi... 33 1.1
BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processi... 33 1.1
AY211915-1|AAO65168.1| 148|Homo sapiens sarcoma antigen NY-SAR-... 33 1.1
AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processi... 33 1.1
AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processi... 33 1.1
AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processi... 33 1.1
AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processi... 33 1.1
AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens ... 33 1.1
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 33 1.4
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 33 1.4
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 33 1.4
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 33 1.4
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 32 3.3
BC035974-1|AAH35974.1| 795|Homo sapiens DEAH (Asp-Glu-Ala-His) ... 31 7.6
AF279891-1|AAF90182.1| 795|Homo sapiens dead box protein 15 pro... 31 7.6
AB001636-1|BAA23987.1| 813|Homo sapiens ATP-dependent RNA helic... 31 7.6
>BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 33.5 bits (73), Expect = 1.1
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 118 HGRQVRSSLRLHRSGPRSDGATRRSRLLQGHR-TPHQGVHKTXKNSLTRSPSQXRT 282
H R RS R HRS RS A +RSR + + H+ K N +RS SQ RT
Sbjct: 425 HSRS-RSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRT 479
>BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 33.5 bits (73), Expect = 1.1
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 118 HGRQVRSSLRLHRSGPRSDGATRRSRLLQGHR-TPHQGVHKTXKNSLTRSPSQXRT 282
H R RS R HRS RS A +RSR + + H+ K N +RS SQ RT
Sbjct: 425 HSRS-RSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRT 479
>AY211915-1|AAO65168.1| 148|Homo sapiens sarcoma antigen NY-SAR-27
protein.
Length = 148
Score = 33.5 bits (73), Expect = 1.1
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 118 HGRQVRSSLRLHRSGPRSDGATRRSRLLQGHR-TPHQGVHKTXKNSLTRSPSQXRT 282
H R RS R HRS RS A +RSR + + H+ K N +RS SQ RT
Sbjct: 27 HSRS-RSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRT 81
>AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 33.5 bits (73), Expect = 1.1
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 118 HGRQVRSSLRLHRSGPRSDGATRRSRLLQGHR-TPHQGVHKTXKNSLTRSPSQXRT 282
H R RS R HRS RS A +RSR + + H+ K N +RS SQ RT
Sbjct: 314 HSRS-RSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRT 368
>AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 33.5 bits (73), Expect = 1.1
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 118 HGRQVRSSLRLHRSGPRSDGATRRSRLLQGHR-TPHQGVHKTXKNSLTRSPSQXRT 282
H R RS R HRS RS A +RSR + + H+ K N +RS SQ RT
Sbjct: 425 HSRS-RSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRT 479
>AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 33.5 bits (73), Expect = 1.1
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 118 HGRQVRSSLRLHRSGPRSDGATRRSRLLQGHR-TPHQGVHKTXKNSLTRSPSQXRT 282
H R RS R HRS RS A +RSR + + H+ K N +RS SQ RT
Sbjct: 314 HSRS-RSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRT 368
>AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 33.5 bits (73), Expect = 1.1
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 118 HGRQVRSSLRLHRSGPRSDGATRRSRLLQGHR-TPHQGVHKTXKNSLTRSPSQXRT 282
H R RS R HRS RS A +RSR + + H+ K N +RS SQ RT
Sbjct: 425 HSRS-RSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRT 479
>AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens
cDNA FLJ10330 fis, clone NT2RM2000624, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 4. ).
Length = 546
Score = 33.5 bits (73), Expect = 1.1
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 118 HGRQVRSSLRLHRSGPRSDGATRRSRLLQGHR-TPHQGVHKTXKNSLTRSPSQXRT 282
H R RS R HRS RS A +RSR + + H+ K N +RS SQ RT
Sbjct: 425 HSRS-RSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRT 479
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 33.1 bits (72), Expect = 1.4
Identities = 30/110 (27%), Positives = 32/110 (29%), Gaps = 7/110 (6%)
Frame = +1
Query: 433 PRKPPKGQ--PXVLKKXP-----PPXPXKXXGXXWXKTPXGXXPXFXKKGVXPXXXGKXX 591
P PP GQ P L P PP P G + + P G P G P G
Sbjct: 250 PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPP----GPPPPVPGYGP 305
Query: 592 KKXXAPXXXGXPXXXXXXXXTPPGGFXKNSXXXPPPPXXXXXXFXNPPPP 741
P G P PPG PPP PP P
Sbjct: 306 PPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAP 355
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 33.1 bits (72), Expect = 1.4
Identities = 30/110 (27%), Positives = 32/110 (29%), Gaps = 7/110 (6%)
Frame = +1
Query: 433 PRKPPKGQ--PXVLKKXP-----PPXPXKXXGXXWXKTPXGXXPXFXKKGVXPXXXGKXX 591
P PP GQ P L P PP P G + + P G P G P G
Sbjct: 250 PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPP----GPPPPVPGYGP 305
Query: 592 KKXXAPXXXGXPXXXXXXXXTPPGGFXKNSXXXPPPPXXXXXXFXNPPPP 741
P G P PPG PPP PP P
Sbjct: 306 PPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAP 355
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 33.1 bits (72), Expect = 1.4
Identities = 30/110 (27%), Positives = 32/110 (29%), Gaps = 7/110 (6%)
Frame = +1
Query: 433 PRKPPKGQ--PXVLKKXP-----PPXPXKXXGXXWXKTPXGXXPXFXKKGVXPXXXGKXX 591
P PP GQ P L P PP P G + + P G P G P G
Sbjct: 287 PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPP----GPPPPVPGYGP 342
Query: 592 KKXXAPXXXGXPXXXXXXXXTPPGGFXKNSXXXPPPPXXXXXXFXNPPPP 741
P G P PPG PPP PP P
Sbjct: 343 PPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAP 392
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 33.1 bits (72), Expect = 1.4
Identities = 30/110 (27%), Positives = 32/110 (29%), Gaps = 7/110 (6%)
Frame = +1
Query: 433 PRKPPKGQ--PXVLKKXP-----PPXPXKXXGXXWXKTPXGXXPXFXKKGVXPXXXGKXX 591
P PP GQ P L P PP P G + + P G P G P G
Sbjct: 250 PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPP----GPPPPVPGYGP 305
Query: 592 KKXXAPXXXGXPXXXXXXXXTPPGGFXKNSXXXPPPPXXXXXXFXNPPPP 741
P G P PPG PPP PP P
Sbjct: 306 PPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAP 355
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 31.9 bits (69), Expect = 3.3
Identities = 26/100 (26%), Positives = 28/100 (28%)
Frame = +1
Query: 442 PPKGQPXVLKKXPPPXPXKXXGXXWXKTPXGXXPXFXKKGVXPXXXGKXXKKXXAPXXXG 621
PP P PPP P G + + P G P G P G P G
Sbjct: 188 PPLAGPPNRGDRPPP-PVLFPGQPFGQPPLGPLPP----GPPPPVPGYGPPPGPPPPQQG 242
Query: 622 XPXXXXXXXXTPPGGFXKNSXXXPPPPXXXXXXFXNPPPP 741
P PPG PPP PP P
Sbjct: 243 PPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAP 282
>BC035974-1|AAH35974.1| 795|Homo sapiens DEAH (Asp-Glu-Ala-His) box
polypeptide 15 protein.
Length = 795
Score = 30.7 bits (66), Expect = 7.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 654 PPXGVXKKFPXGAPXPPQXXXXLFXPPPPPKK 749
P G K P + PPQ +F PPPP K+
Sbjct: 378 PEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQ 409
>AF279891-1|AAF90182.1| 795|Homo sapiens dead box protein 15
protein.
Length = 795
Score = 30.7 bits (66), Expect = 7.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 654 PPXGVXKKFPXGAPXPPQXXXXLFXPPPPPKK 749
P G K P + PPQ +F PPPP K+
Sbjct: 378 PEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQ 409
>AB001636-1|BAA23987.1| 813|Homo sapiens ATP-dependent RNA helicase
#46 protein.
Length = 813
Score = 30.7 bits (66), Expect = 7.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 654 PPXGVXKKFPXGAPXPPQXXXXLFXPPPPPKK 749
P G K P + PPQ +F PPPP K+
Sbjct: 378 PEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQ 409
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.315 0.137 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,789,750
Number of Sequences: 237096
Number of extensions: 1885269
Number of successful extensions: 6320
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4788
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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