Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_E23
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   195   6e-51
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   8.3  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  195 bits (476), Expect = 6e-51
 Identities = 85/118 (72%), Positives = 106/118 (89%)
 Frame = +2

Query: 236 KEDXKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 415
           +++ KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 416 KQTRAGQRTRFKAFVAXGDNNGHIGLGVKCXXEVATAIRGAIILAKLSVLPVRRGYWG 589
           KQTRAGQRTRFKAFV  GD++GH+GLG+KC  EVATAIRGAII+ KLS++P+RRGYWG
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWG 144



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 26/54 (48%), Positives = 33/54 (61%)
 Frame = +1

Query: 586 G*QIGKPHXVPCKVXGSVVL*QSGLIPAPXGTGXVSAPVPKKLLXMAGVQXCYT 747
           G  +G PH VP KV G        L+PAP G G V+APV K+ L +AG++ CYT
Sbjct: 144 GTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYT 197


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -2

Query: 595 SVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVAXGNKCLETCALSGTCLF 416
           +VTP +SS+  + ++    +A   +    A+ HT  N   +V     C+    +   C+F
Sbjct: 254 TVTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIGCVAFAVVMALCIF 312

Query: 415 LY 410
           LY
Sbjct: 313 LY 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,094
Number of Sequences: 5004
Number of extensions: 50113
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)