Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_E23
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      191   6e-49
07_01_0756 + 5819367-5820038,5820847-5821005                          186   2e-47
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    42   7e-04
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     39   0.005
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509...    29   6.6  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  191 bits (466), Expect = 6e-49
 Identities = 87/120 (72%), Positives = 104/120 (86%)
 Frame = +2

Query: 236 KEDXKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 415
           +++ ++WVPVTKLGRLV+EG+  K+E IYL SLP+KE +I++  + P L DEV+KI PVQ
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96

Query: 416 KQTRAGQRTRFKAFVAXGDNNGHIGLGVKCXXEVATAIRGAIILAKLSVLPVRRGYWGNR 595
           KQTRAGQRTRFKAFV  GDNNGH+GLGVKC  EVATAIRGAIILAKLSV+PVRRGYWGN+
Sbjct: 97  KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 156



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 27/55 (49%), Positives = 37/55 (67%)
 Frame = +1

Query: 586 G*QIGKPHXVPCKVXGSVVL*QSGLIPAPXGTGXVSAPVPKKLLXMAGVQXCYTS 750
           G +IG+PH VPCKV G        ++PAP G+G V+A VPKK+L  AG++  +TS
Sbjct: 154 GNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTS 208


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  186 bits (454), Expect = 2e-47
 Identities = 86/120 (71%), Positives = 103/120 (85%)
 Frame = +2

Query: 236 KEDXKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 415
           +++ ++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++  + P L DEV+KI PVQ
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99

Query: 416 KQTRAGQRTRFKAFVAXGDNNGHIGLGVKCXXEVATAIRGAIILAKLSVLPVRRGYWGNR 595
           KQTRAGQRTRFKAFV  GD +GH+GLGVKC  EVATAIRGAIILAKLSV+PVRRGYWGN+
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNK 159



 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 28/55 (50%), Positives = 37/55 (67%)
 Frame = +1

Query: 586 G*QIGKPHXVPCKVXGSVVL*QSGLIPAPXGTGXVSAPVPKKLLXMAGVQXCYTS 750
           G +IGKPH VPCKV G        ++PAP G+G V+A VPKK+L  AG++  +TS
Sbjct: 157 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTS 211


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 20/63 (31%), Positives = 36/63 (57%)
 Frame = +2

Query: 383 NDEVLKIMPVQKQTRAGQRTRFKAFVAXGDNNGHIGLGVKCXXEVATAIRGAIILAKLSV 562
           ++ V+++  V K  + G++  F+A V  GD  GH+G+GV    EV  AI  A +  + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230

Query: 563 LPV 571
           + V
Sbjct: 231 VTV 233


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +1

Query: 601 KPHXVPCKVXGSVVL*QSGLIPAPXGTGXVSAPVPKKLLXMAGVQXCYTS 750
           KPH V CKV          ++  P G+  V+  VPKK+L  AG++  +TS
Sbjct: 47  KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTS 96



 Score = 36.3 bits (80), Expect = 0.033
 Identities = 19/32 (59%), Positives = 21/32 (65%)
 Frame = +2

Query: 455 FVAXGDNNGHIGLGVKCXXEVATAIRGAIILA 550
           FV  GD + HI LGVKC    AT + GAIILA
Sbjct: 2   FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31


>11_04_0439 +
           17749634-17749858,17750164-17750301,17750770-17750943,
           17751099-17751184,17751264-17751525,17751616-17751815,
           17753631-17754086,17754198-17754474,17754694-17754828,
           17754946-17755026,17756305-17756400,17756676-17756771,
           17756844-17756900,17756975-17757043,17757158-17757237,
           17758185-17758329,17758422-17758511,17758914-17758994,
           17759103-17759198,17759279-17759335,17759417-17759461,
           17759547-17759612,17760304-17760350,17762771-17762865,
           17763375-17763393,17763438-17763498,17763637-17763660
          Length = 1085

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 517 DFLAALHTQTNMTVVVAXGNKCLETCALSGTCLFLYRHD 401
           +F+A LHT  +M   V      +E C LS    F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,799,915
Number of Sequences: 37544
Number of extensions: 378059
Number of successful extensions: 889
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)