Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_E17
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   116   3e-27
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   116   6e-27
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    28   1.5  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   3.5  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   4.7  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   8.2  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  116 bits (280), Expect = 3e-27
 Identities = 55/91 (60%), Positives = 66/91 (72%)
 Frame = +2

Query: 257 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 436
           W GS+K  A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLG
Sbjct: 58  WHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117

Query: 437 EKYIRRVKMAPGVTVVNSPKQKDELIIEGNS 529
           E+  R +K  PGVTV  S   KDE+IIEGNS
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEIIIEGNS 148



 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 20/45 (44%), Positives = 36/45 (80%)
 Frame = +1

Query: 88  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 222
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELK 47



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 22/35 (62%), Positives = 28/35 (80%)
 Frame = +3

Query: 537 DVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 641
           +VS SAA I+Q   V+NKDIRKFLDG+YVSE+  +
Sbjct: 151 NVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  116 bits (278), Expect = 6e-27
 Identities = 54/91 (59%), Positives = 67/91 (73%)
 Frame = +2

Query: 257 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 436
           W GS+K  A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLG
Sbjct: 58  WHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117

Query: 437 EKYIRRVKMAPGVTVVNSPKQKDELIIEGNS 529
           E+  R +K  PGVTV  S   KDE+I+EGNS
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEIILEGNS 148



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 19/45 (42%), Positives = 33/45 (73%)
 Frame = +1

Query: 88  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 222
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMK 47



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +3

Query: 516 LKATPWXDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 641
           L+     +VS SAA I+Q   V+NKDIRKFLDG+YVSE+  +
Sbjct: 144 LEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 39  LKILFFRLLCQTKPKHEANCSKSESQNPRRA 131
           LKI  F +LC  + K +  C K + +NP  A
Sbjct: 20  LKISKFLILCMRRNKRQLACMKCQCENPMAA 50


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 671 YLMFLYVI*HNSCFLRYIKTIQELSDILILD 579
           Y  F++ + H S  L Y KT++E++ + I+D
Sbjct: 788 YYEFIHSL-HQSSLLPYFKTLKEIAHLFIID 817


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 537 DVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDDI 656
           D+S+SA    + T + N+++ K  +GL+++ +T+  LD I
Sbjct: 80  DISNSACRASKITALNNRELYKDDNGLFITVQTS-FLDGI 118


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = -2

Query: 490 RVNDSHTRCHLYPSDVFLPQEVT 422
           ++N++++ CH YP  + +P  ++
Sbjct: 152 KINENYSECHSYPQALAVPASIS 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,385
Number of Sequences: 5004
Number of extensions: 54998
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)