Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_E17
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   140   9e-34
Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical...    28   7.7  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  140 bits (340), Expect = 9e-34
 Identities = 61/94 (64%), Positives = 75/94 (79%)
 Frame = +2

Query: 245 KVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 424
           +V KWFG +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIR
Sbjct: 54  RVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIR 113

Query: 425 NFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGN 526
           NFLGEK +RRV +  GV    S  QKDE+++EGN
Sbjct: 114 NFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGN 147



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +3

Query: 540 VSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 653
           VS +AA IQQST VK KDIRKFLDG+YVSEKTT+V  D
Sbjct: 152 VSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 20/48 (41%), Positives = 34/48 (70%)
 Frame = +1

Query: 85  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 228
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERI 48


>Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 318 MFSTCEQTVLTAASSFLDPNHFSTFRRXRVYH-ANVNSQVFKVPFENSA 175
           M  T E  ++  A S + PN  + F +  VYH A+V+  + K P  +SA
Sbjct: 437 MVETVESNIIANAKSIVVPNKSAVFEQGAVYHIADVHLNLCK-PTRDSA 484


>Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 318 MFSTCEQTVLTAASSFLDPNHFSTFRRXRVYH-ANVNSQVFKVPFENSA 175
           M  T E  ++  A S + PN  + F +  VYH A+V+  + K P  +SA
Sbjct: 437 MVETVESNIIANAKSIVVPNKSAVFEQGAVYHIADVHLNLCK-PTRDSA 484


>AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical
           protein Y56A3A.15 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 653 VI*HNSCFLRYIKTIQELSDILILDCSRLLDESSRARD 540
           ++ HN  +L + KT   L DIL+ +CS+   E +   D
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSKFSIEYNNLPD 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,931,827
Number of Sequences: 27780
Number of extensions: 311511
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)