Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_E11
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   152   3e-37
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    31   0.81 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.81 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.81 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.81 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    31   0.81 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    31   0.81 

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  152 bits (369), Expect = 3e-37
 Identities = 74/137 (54%), Positives = 98/137 (71%), Gaps = 1/137 (0%)
 Frame = +1

Query: 295 QLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 471
           Q  +   ++  + + T N  V+ + L K AI+ VDA PFRQWYE+HY LPL RKK AKL+
Sbjct: 71  QTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLS 130

Query: 472 EAEEAIINKKRSQKTARKYLARQRLAKVEGALEEXFHTGRLLACVASRPGQCGRADGYXL 651
           E + AI+NKKRS  T +KY  RQ+ A V+  L E F+TGRLLA ++S PGQ G+A+GY L
Sbjct: 131 EEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYIL 190

Query: 652 XGKELEFYLRKIKSKRA 702
            GKEL+FYLRKI++K+A
Sbjct: 191 EGKELDFYLRKIRAKKA 207



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 40/50 (80%), Positives = 46/50 (92%)
 Frame = +3

Query: 219 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 368
           R+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTL
Sbjct: 47  RTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTL 96



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = +2

Query: 80  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRI 208
           MGISRD WHKR  TG  +    KKRK+ELGRPAANT++G  R+
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRV 43


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 249 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 353
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 249 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 353
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 249 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 353
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 249 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 353
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 249 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 353
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 249 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 353
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,749,082
Number of Sequences: 27780
Number of extensions: 333843
Number of successful extensions: 900
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)