Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_E09
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    27   2.7  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    27   3.6  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    26   8.2  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    26   8.2  

>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 601 IFFRPWSSNCICWCGG 554
           +F RPWS N +C C G
Sbjct: 1   MFLRPWSRNFLCSCRG 16


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 710 SISDT*KMNEIASLSGSYALLSNR-SSVKGCPLRTTKHFFSSLVIKLYL 567
           S SD+ +  E  SL  S   +  R   +KG  L +T HF S L+I L+L
Sbjct: 161 SDSDSDEAPEEVSLKSSSDEVKKRLQRLKGNELHSTAHFVSLLLIVLFL 209


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 402 TTIARDTTVQIYS*QHPWRVHSI 334
           TT + D TVQIY    P +VH+I
Sbjct: 38  TTCSADDTVQIYDALDPKQVHTI 60


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +3

Query: 6   FXYRSHYREFLKILRRTDLASRYARVHSTVLKITKLSRNFTQCL 137
           F ++  Y+E +     TD  SR   +   V K+    + +  CL
Sbjct: 350 FPFQGEYKELVSCSNCTDYQSRNLEIRCGVKKMGDREKKYVHCL 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,528,547
Number of Sequences: 5004
Number of extensions: 72915
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)