Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_E08
         (971 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.036
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.2  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   7.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   7.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 0.036
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 552 PXPGGRPGAXAXXRGGPXXXPXGPPPRPPXXXPP 653
           P P       A  RG P     GPPP  P   PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 28.3 bits (60), Expect = 0.11
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
 Frame = +2

Query: 701 PPXXXPXPXP-PXXXP--PXAAPPPXXXXRPPXXXPPRXPPXXPP 826
           P    P P P P   P  P    PP     PP   PP  PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 28.3 bits (60), Expect = 0.11
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +1

Query: 628 PGPPXGXPPXXRXXXXGXPPXPXR-PPPXXSPXXPP 732
           PGP        +    G PP P + PPP   P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 26.2 bits (55), Expect = 0.45
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = +1

Query: 685 PXPXRPPPXXSPXXPPXXXXAXXXXPPXXXXPPPPXXPPPRXPXXAPP 828
           P    P P  SP   P         P     P P   PPP  P  APP
Sbjct: 16  PSSGAPGPQPSPHQSPQA-------PQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.8 bits (54), Expect = 0.59
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +3

Query: 564 GRPGAXAXXRGGPXXXPXGPPPRPPXXXPPXXP 662
           G PG        P     G PP P    PP  P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 10/35 (28%), Positives = 12/35 (34%)
 Frame = +3

Query: 558 PGGRPGAXAXXRGGPXXXPXGPPPRPPXXXPPXXP 662
           PG +P      +      P  P   PP   PP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 577 PRXXXXGAPXXXXRAXRPGPPXGXPP 654
           P+    G+P    +   PG P G PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -2

Query: 274 PPXXXXAXPPSXPPXFPP 221
           PP      PP  PP  PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = +2

Query: 731 PXXXPPXAAPPPXXXXRPPXXXPPRXPPXXPPXG 832
           P    P   P P    + P    P  P   PP G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPG 49



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 686 PRPXAPPXXXPXPXPPXXXPPXAAP 760
           P+  +PP   P   PP   PP A P
Sbjct: 34  PQRGSPPN--PSQGPPPGGPPGAPP 56


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 729 GXGXGXXXGGAXGRGG 682
           G G G   GG+ GRGG
Sbjct: 81  GKGRGHGKGGSRGRGG 96


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 18/67 (26%), Positives = 19/67 (28%)
 Frame = -2

Query: 412 RXPPPPXRRXTEXXPXPGMHXXTSPPDPPXQ*NXXXPXPPRXPAXXPPXXXXAXPPSXPP 233
           R P P  RR  E    PG +     P P        P   R P   P        P   P
Sbjct: 82  RPPHPRLRREAESEAEPGNNRPVYIPQP----RPPHPRLRREPEAEPGNNRPVYIPQPRP 137

Query: 232 XFPPXXR 212
             P   R
Sbjct: 138 PHPRLRR 144


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +3

Query: 285 GXRGGXGXCXFHCXGGSGGEVXXCIP 362
           G   G G C   C  G G +V    P
Sbjct: 14  GANSGIGKCLIECLVGKGMKVIGIAP 39


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 682 PPXPXRPPPXXSPXXP 729
           PP P  PPP  S   P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.153    0.548 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,826
Number of Sequences: 438
Number of extensions: 12479
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32048835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)