Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_E02
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.010
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.50 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   2.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.7  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   6.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.1  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   8.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = +3

Query: 504 PPPXPPXXXXXXXXXXXXPGGXXXXXPXPXXPRPPXXXXPPPXXXXXXXXXPPPPP 671
           PPP PP            P G     P P    P     PPP         PP PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/56 (26%), Positives = 15/56 (26%)
 Frame = +3

Query: 504 PPPXPPXXXXXXXXXXXXPGGXXXXXPXPXXPRPPXXXXPPPXXXXXXXXXPPPPP 671
           PPP PP             G      P P  P         P         PPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = +3

Query: 504 PPPXPPXXXXXXXXXXXXPGGXXXXXPXPXXPRPPXXXXPPPXXXXXXXXXPPPPP 671
           PPP PP            P       P P    PP    PP          PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIP----VPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 596 PXXPPXXXPPPXPXXXXXPXXPPPP 670
           P   P   PPP P     P  PPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +1

Query: 583 PXPXXXXPPXXXPPPXPXXLXXXXXPPPP 669
           P P    PP   PPP          PPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 605 PPXXXPPPXPXXXXXPXXPPPPXXXXGEKK 694
           PP   PPP P     P   PPP    G  K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +3

Query: 588 PXXPRPPXXXXPPPXXXXXXXXXPPPPPXXXXXKKK 695
           P  P PP    PPP         PPPPP     K+K
Sbjct: 6   PGNPPPP----PPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 596 PXXPPXXXPPPXPXXXXXPXXPPPP 670
           P  PP   PPP       P  PPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 162 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGT 308
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -2

Query: 280 GAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSLFILD 110
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -2

Query: 250 NSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSL--FILDI*ERLHGXRAT 77
           N S+  F L A+       +  S  +N C LA+++   ++SSL   + +  ER    RA 
Sbjct: 121 NPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSLPSGMPEAIERFGRVRAI 180

Query: 76  RNQPTSK 56
              P  K
Sbjct: 181 TKTPEKK 187


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
 Frame = +3

Query: 588  PXXPRPPXXXXPPPXXXXXXXXXP--PPPP 671
            P  P PP    PPP         P  PPPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = +3

Query: 168 AFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTDLX*XQAFSTEFY 347
           +  K +   EDN     AE  ++T +  ++++   +A ET  K+F  DL     +S ++ 
Sbjct: 51  SLAKTEILHEDNPGLLEAEGLERTYKFRQDQLAPNVALETATKSFSLDLDKFGGYSFDYT 110

Query: 348 KN 353
           ++
Sbjct: 111 RD 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,081
Number of Sequences: 5004
Number of extensions: 33019
Number of successful extensions: 205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)