Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_D24
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 36 0.053
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 34 0.16
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 32 0.50
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 32 0.66
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 32 0.66
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 32 0.66
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 32 0.66
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 31 0.87
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 31 0.87
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.5
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 31 1.5
Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical pr... 30 2.0
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 30 2.0
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 30 2.7
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 30 2.7
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 30 2.7
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 30 2.7
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 30 2.7
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 3.5
U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter... 29 3.5
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 29 3.5
Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 4.6
CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical ... 29 4.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.1
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 29 6.1
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 6.1
AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen prot... 29 6.1
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 29 6.1
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 6.1
AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen prot... 29 6.1
AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen pro... 29 6.1
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.1
X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein. 28 8.1
U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory ... 28 8.1
U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein. 28 8.1
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 28 8.1
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 28 8.1
AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical... 28 8.1
AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical... 28 8.1
AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative seri... 28 8.1
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 8.1
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 28 8.1
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical
protein T01C3.7 protein.
Length = 352
Score = 35.5 bits (78), Expect = 0.053
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGR----XGQXGGXVXKRNGXGAXEXGRGSXGTGHRALXGVRGL 730
GG GG GG G+ GR G GG R G G RG G+ G G+
Sbjct: 52 GGFRGGRGGGDRGGFRGGRGGGDRGGFGGRGSPRGGFGGRGSPRGGRGSPRGGRGGAGGM 111
Query: 729 XPGKELV 709
GK +V
Sbjct: 112 RGGKTVV 118
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 33.9 bits (74), Expect = 0.16
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG CGG GG G G G GG G G G G G G
Sbjct: 119 GGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGGGCG 164
Score = 31.9 bits (69), Expect = 0.66
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG CGG GG G G G GG G G G G G G
Sbjct: 130 GGGCGGGGGGGCGGGGGGGCGGGGGGCG--GGGGGCGGGGGGCGGG 173
Score = 31.5 bits (68), Expect = 0.87
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG CGG GG G G G GG G G G G G G
Sbjct: 146 GGGCGGGGGGCGGG--GGGCGGGGGGCGGGGGGGCGGGGGGGCGGG 189
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG CGG GG G G G GG G G G G G G
Sbjct: 138 GGGCGGGGGGGCGGGGGGCGGGGGG--CGGGGGGCGGGGGGGCGGG 181
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -3
Query: 888 CGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
CGG GG G G G GG G G G G G G
Sbjct: 118 CGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGG 160
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG CGG GG G G G GG G G G G G G
Sbjct: 126 GGGCGGGCGGGGGGGCGG--GGGGGCGGGGGGCGGGGGGCGGGGGG 169
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -3
Query: 888 CGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
CGG GG G G G GG G G G G G G
Sbjct: 61 CGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGG 103
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXR-GRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG CGG GG G G G GG G G G G G G
Sbjct: 62 GGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGG 108
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 32.3 bits (70), Expect = 0.50
Identities = 21/59 (35%), Positives = 22/59 (37%)
Frame = -3
Query: 894 GXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTGHRALXGVRGLXPGK 718
G GG GG G G G GG R G G GRG G G G G G+
Sbjct: 216 GGGGGGGGGGGYGSGGGWGGGGGGRDRDRGGWGGGGGGRGYGGGGGGGGYGYGGGGGGR 274
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 31.9 bits (69), Expect = 0.66
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 212 PLKGAPGESGACGSAGRNGRTARPRPSPR 298
P +GAP SGA GS G+ R P P R
Sbjct: 832 PAQGAPSPSGAAGSNGKQPRYGTPAPPSR 860
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.9 bits (69), Expect = 0.66
Identities = 21/60 (35%), Positives = 22/60 (36%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTGHRALXGVRGLXPGK 718
GG G GG GW GR G G NG G G G G G G G G+
Sbjct: 50 GGGPGWGRGGGGSGWGGGRGGGWGN-----NGGGGNWGGNGGGGNGGGGRGGGGGGGGGR 104
Score = 31.9 bits (69), Expect = 0.66
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGW-XRGRXGQXGGXVXKRNGXGAXEXGRGSXGTGHRALXGVRG 733
GG G GG GW G G GG NG G G G G G G RG
Sbjct: 58 GGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNG-GGGRGGGGGGGGGRGGGGGGRG 112
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG GG GG G G G GG G G GRG G G
Sbjct: 92 GGRGGGGGGGGGRGGGGGGRGGGGGG---GGGRGGGGGGRGGGGRG 134
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRPS-PR 298
G PGE G G AGR G RP P+ PR
Sbjct: 177 GGPGEQGPQGDAGRPGAAGRPGPAGPR 203
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRP 289
G PG G G AG+NG RP P
Sbjct: 231 GNPGAPGNDGEAGKNGNAGRPGP 253
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRPS-PR 298
G PGE G G AGR G RP P+ PR
Sbjct: 171 GGPGEQGPQGDAGRPGAAGRPGPAGPR 197
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRP 289
G PG G G AG+NG RP P
Sbjct: 225 GNPGAPGNDGEAGKNGNAGRPGP 247
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 31.5 bits (68), Expect = 0.87
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTGH 757
GG CGG GG G G G GG G G G G G G+
Sbjct: 92 GGGCGGGGGGCGGG---GGCGGGGGGGCGGGGGGGCGGGGGGGGGGY 135
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 722 PGXSPLTP*SARXPVPXDPLPXSXAPXPLRX*TXPPXWPXLPR 850
P P P R P P +P P P P+R T PP P PR
Sbjct: 542 PVREPTPPPPPREPTPREPTPE---PEPVREPTPPPPPPAKPR 581
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARP 283
G PG SG CG GR G RP
Sbjct: 153 GPPGPSGTCGQVGRPGPDGRP 173
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG GG GG GW + GQ GG + G G G G G
Sbjct: 215 GGSQGGSQGGSQGGWG-NQGGQQGGGRGGQQGPGGWGGGGRGGGWG 259
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Frame = -3
Query: 906 AXVGGXCGGXA---GGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
A G GG GG G GR G GG G GA G GS G G
Sbjct: 43 ASAGASAGGTGGGRGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWG 94
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG CGG GG G G G G + G G G G G
Sbjct: 121 GGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGG 166
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG CGG GG G G G GG G G G G G G
Sbjct: 87 GGGCGGGGGGCGGG--GGCGGGGGGCGGGGGGCGGGGGGCGGGGGG 130
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTGH 757
GG CGG GG G G GG +G G G S G G+
Sbjct: 160 GGGCGGGGGGGCGGGSSG----GGGYAVAPSGGGGCGGGGSSGGGGY 202
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -3
Query: 888 CGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
CGG GG G G G GG G G G G G G
Sbjct: 79 CGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGG 121
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG CGG GG G G G GG G G G G G
Sbjct: 107 GGGCGGGGGGCGGG--GGGCGGGGGGCGGGGGGGCGGGSSGGCGGG 150
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXG 766
GG CGG GG G G G GG G G G G G
Sbjct: 128 GGGCGGGGGGGCGGGSSGGCG--GGSSGGCGGGGGGGCGGGGGG 169
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG CGG GG G G G G + G G G G G
Sbjct: 121 GGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGG 166
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG CGG GG G G G GG G G G G G G
Sbjct: 87 GGGCGGGGGGCGGG--GGCGGGGGGCGGGGGGCGGGGGGCGGGGGG 130
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTGH 757
GG CGG GG G G GG +G G G S G G+
Sbjct: 160 GGGCGGGGGGGCGGGSSG----GGGYAVAPSGGGGCGGGGSSGGGGY 202
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -3
Query: 888 CGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
CGG GG G G G GG G G G G G G
Sbjct: 79 CGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGG 121
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTG 760
GG CGG GG G G G GG G G G G G
Sbjct: 107 GGGCGGGGGGCGGG--GGGCGGGGGGCGGGGGGGCGGGSSGGCGGG 150
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXG 766
GG CGG GG G G G GG G G G G G
Sbjct: 128 GGGCGGGGGGGCGGGSSGGCG--GGSSGGCGGGGGGGCGGGGGG 169
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRG 775
GG GG GW RG G+ GG NG G G G
Sbjct: 43 GGGPGGWGNNGGGGWGRG-GGRGGGDWGGNNGGGGNWGGNG 82
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/68 (35%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Frame = -3
Query: 897 GGXCGGXAGGXXXGW----XRGRXGQXGGXVXKRN-----GXGAXEXGRGSXGTGHRALX 745
GG GG GG G RG G GG N G G G G G G R
Sbjct: 126 GGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGGGGAGERIAE 185
Query: 744 GVRGLXPG 721
GV G G
Sbjct: 186 GVLGALLG 193
>Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical
protein K08C9.4 protein.
Length = 301
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRPSPR 298
G GE+GA G AG+NG+ + P P+
Sbjct: 185 GQDGEAGAPGPAGKNGQRGQGAPGPQ 210
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRP 289
G PG+ GA G AG NG P P
Sbjct: 103 GQPGDDGAPGKAGDNGHDGIPSP 125
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 215 LKGAPGESGA---CGSAGRNGRTARPRPSPRCWRRALNVDPP 331
+ GAPGE+G G+AG++G P P+ + +R P
Sbjct: 168 IDGAPGEAGPQGDAGAAGQDGEAGAPGPAGKNGQRGQGAPGP 209
>Z54237-5|CAN86900.1| 273|Caenorhabditis elegans Hypothetical
protein T11B7.3b protein.
Length = 273
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRPSP 295
GAPG+ GA G G +G+ R +P P
Sbjct: 191 GAPGQDGAPGHPGADGQRQRGQPGP 215
>Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical
protein T11B7.3a protein.
Length = 297
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRPSP 295
GAPG+ GA G G +G+ R +P P
Sbjct: 191 GAPGQDGAPGHPGADGQRQRGQPGP 215
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 218 KGAPGESGACGSAGRNGRTARP-RPSPR 298
KG PG+ GA G G NGR P P P+
Sbjct: 155 KGPPGQPGAPGEQGPNGRPGAPGAPGPQ 182
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 218 KGAPGESGACGSAGRNGRTARPRP 289
+G PGE G G +G NGR P P
Sbjct: 153 RGPPGEVGPAGPSGDNGRKGPPGP 176
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 218 KGAPGESGACGSAGRNGRTARPRP 289
+G PGE G G +G NGR P P
Sbjct: 153 RGPPGEVGPAGPSGDNGRKGPPGP 176
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 218 KGAPGESGACGSAGRNGRTARPRPSPRCWRR 310
+G PGE+G G G G T P P R +R
Sbjct: 171 RGTPGEAGTPGPVGEPGETGGPGPQGRPGQR 201
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 218 KGAPGESGACGSAGRNGRT 274
KG PG+ G G G+NGRT
Sbjct: 237 KGNPGDEGRQGHPGKNGRT 255
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/59 (37%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = -3
Query: 906 AXVGGXCGGXAG-GXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTGHRALXGVRG 733
A GG GG G G G G G GG R G G GRG G G RG
Sbjct: 289 ADAGGERGGRGGRGGFGGGRGGPMGGRGGFGGDRGGYGGG-GGRGGFDGGRGGGGGFRG 346
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +3
Query: 222 EHRVSPARVAVPGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPADATSPHSPDT 386
+ +V+PA A P DA P+ P C PA A +P + D+
Sbjct: 294 DEQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSAAPAPAAAPAATDS 348
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = -3
Query: 897 GGXCGG---XAGGXXXGWXRGRXGQXGGXVXKRNGXGAXEXGRGSXGTGH 757
GG GG +GG G G G GG +G G G G+ G G+
Sbjct: 787 GGGGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGN 836
>U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 5 protein.
Length = 284
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARP 283
GAPGE G G G+NG T P
Sbjct: 103 GAPGEPGGTGPDGKNGPTGLP 123
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 218 KGAPGESGACGSAGRNGRTARPRPSPRCWRRALNVDPP 331
+GAPG G GS GR G A+ + +P +A PP
Sbjct: 199 RGAPGHPGQAGSPGRPGVDAQSQSNPGAPGQAGPQGPP 236
>Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical
protein T02D1.6 protein.
Length = 433
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -2
Query: 478 CRFLVTFQLSGLAVSSVVGAWSWGPTSAS-PQVSGECGEVASAGPGTAQPGRVYV 317
C F+++ L + SV+G W +G T V G G +AS TA YV
Sbjct: 113 CDFVMSLSLPPAILDSVIGFWIFGTTMCKVHHVFGSVGRIASTFLITAMSFDRYV 167
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 218 KGAPGESGACGSAGRNGRTARPRPSP 295
+G PGE+G G GR G+ + R +P
Sbjct: 180 RGPPGEAGPDGEGGRPGQAGQTRSAP 205
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRP 289
G+PGE G G AG GR P P
Sbjct: 218 GSPGEPGPDGRAGHPGRNGPPGP 240
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 218 KGAPGESGACGSAGRNGRTARPRPSP 295
+G PGE+G G GR G+ + R +P
Sbjct: 180 RGPPGEAGPDGEGGRPGQAGQTRSAP 205
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRP 289
G+PGE G G AG GR P P
Sbjct: 218 GSPGEPGPDGRAGHPGRNGPPGP 240
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 215 LKGAPGESGACGSAGRNGRTARPRPSP 295
+ G+PG G G GRNG++ + P P
Sbjct: 469 MNGSPGTPGKPGLPGRNGQSCKSIPGP 495
>CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical
protein C52D10.13 protein.
Length = 281
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARP-RPSPR 298
G PGE G G AG++GR +P R P+
Sbjct: 210 GEPGEQGPKGEAGQDGRPGQPGRQGPQ 236
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 256 RAERTHSPPXXXXXXXXTSPQRRPALAAPCQGPLTPP 366
R SPP SPQRRP P P PP
Sbjct: 148 RTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPP 184
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRPSP 295
GAPGE+GA GS G PR +P
Sbjct: 282 GAPGEAGAPGSGGGCDHCPPPRTAP 306
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARP 283
G PG G CG AGR G P
Sbjct: 217 GLPGPPGPCGEAGREGPNGTP 237
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 191 IKALRITPLKGAPGESGACGSAGRNGRTARPRP 289
I+ + + KG PG G CG G G T P P
Sbjct: 248 IRQISLPGRKGPPGLPGQCGPPGPPGYTPPPGP 280
>AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen protein
107, isoform a protein.
Length = 256
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 221 GAPGESGACGSAGRNG 268
GAPGE G G AG+NG
Sbjct: 101 GAPGEDGTPGQAGKNG 116
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 221 GAPGESGACGSAGRNG 268
GAPGE G G AG+NG
Sbjct: 101 GAPGEDGTPGQAGKNG 116
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRP 289
G PG+ G G+ GRNG P P
Sbjct: 152 GPPGQDGIPGNPGRNGEDGAPGP 174
>AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen protein
115 protein.
Length = 393
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 212 PLKGAPGESGACGSAGRNGRTARP 283
P G PG GA G +GR+G+ +P
Sbjct: 193 PRYGPPGAPGASGQSGRDGQDGQP 216
>AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen
protein 71 protein.
Length = 371
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRPSPR 298
G GE GA G G N + P P P+
Sbjct: 265 GKIGEPGATGETGENAENSEPTPGPQ 290
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRPSP 295
G PG +G G+ G NG RP +P
Sbjct: 184 GRPGPNGKAGANGLNGNPGRPPEAP 208
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARP 283
GAPG +G G AG NG P
Sbjct: 154 GAPGPAGPAGDAGANGNPGAP 174
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARP 283
GAPG +G G AG NG P
Sbjct: 154 GAPGPAGPAGDAGANGNPGAP 174
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARP 283
GAPG +G G AG NG P
Sbjct: 154 GAPGPAGPAGDAGANGNPGAP 174
>X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein.
Length = 498
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 187 DNKSFKNYSIKGSTG*VRRVWQCRAERT 270
DN+ ++NY ++ +TG + + +C++ERT
Sbjct: 10 DNEHYENYDVEATTG-MNMMEECQSERT 36
>U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory
abnormality protein4 protein.
Length = 768
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 187 DNKSFKNYSIKGSTG*VRRVWQCRAERT 270
DN+ ++NY ++ +TG + + +C++ERT
Sbjct: 280 DNEHYENYDVEATTG-MNMMEECQSERT 306
>U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein.
Length = 768
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +1
Query: 187 DNKSFKNYSIKGSTG*VRRVWQCRAERT 270
DN+ ++NY ++ +TG + + +C++ERT
Sbjct: 280 DNEHYENYDVEATTG-MNMMEECQSERT 306
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARP 283
GAPG +G G AG NG P
Sbjct: 154 GAPGPAGPAGDAGANGNPGAP 174
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARP 283
GAPG +G G AG NG P
Sbjct: 154 GAPGPAGPAGDAGANGNPGAP 174
>AL132898-21|CAC14418.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 255 PGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 419
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 420 APTTLDTANP 449
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AL132863-12|CAC15862.2| 617|Caenorhabditis elegans Hypothetical
protein Y59A8B.14 protein.
Length = 617
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 255 PGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 419
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 420 APTTLDTANP 449
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AF160189-1|AAD45355.1| 617|Caenorhabditis elegans putative
serine-threonine kinasePAR-4 protein.
Length = 617
Score = 28.3 bits (60), Expect = 8.1
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = +3
Query: 255 PGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPA-----DATSPHSPDTCGLALVGPQDQ 419
P G + PS+ + P CA PGPA ++T+ + +T G+A D
Sbjct: 531 PDGVEGSEDSAAPLGPQRRPSSRSMPTCAPPGPAAGNAQNSTAENGAETDGVA--SASDP 588
Query: 420 APTTLDTANP 449
PT A P
Sbjct: 589 PPTAAPGAPP 598
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRPSP 295
G PG G+ G+ GR G+ +R P P
Sbjct: 182 GQPGHPGSPGNPGRGGQRSRGLPGP 206
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 221 GAPGESGACGSAGRNGRTARPRPSP 295
G PG G+ G+ GR G+ +R P P
Sbjct: 189 GQPGHPGSPGNPGRGGQRSRGLPGP 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,961,938
Number of Sequences: 27780
Number of extensions: 314208
Number of successful extensions: 1878
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1839
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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