Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_D23
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      29   1.2  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    27   2.7  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   4.8  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    27   4.8  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   6.3  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.4  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   8.4  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   8.4  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 105 PSVRQNSLRFXLSEXQXSKSXXDSPYK 25
           P+++QN +RF L + + S+S   SP K
Sbjct: 74  PTIKQNRVRFDLPDDELSRSNVSSPEK 100


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 595 IILYFQLLVFVIIFYNKIISFYFNFVIHPFCVNSALMATFIGIAV 461
           I+ YF   + V   Y K  +F+ +  +  FC+N+ + A  +G+ +
Sbjct: 260 ILPYFLQWMAVFSLYAKYPAFFEHHFLTIFCLNAFIFAYSVGVVI 304


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 505 CVNSALMATFIGIAVCTWKMASRTLLIEAITQVFASFSNMTVVIINS 365
           C NS++ A F G+ +  W  A  +  I    Q    F+N ++ +  S
Sbjct: 214 CGNSSVRADFYGMNMYEWCGADSSFTISGYDQRMEEFANYSIPLFLS 260


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 326 LFYVHELNF*DQNYLRNASFKKYILQTQNNIKKIFSSARYYP 201
           L + H L F D     N   K+ I+ T+N+++ +  S +Y P
Sbjct: 140 LNFYHSLGF-DLETAENTGNKRVIIHTENDLQTVQISNKYSP 180


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 338 KYFTSRKVKRIYDDHGHIAETGKDLCDCLDEKCP 439
           +YF     K  Y D  HI    K+ C C  +K P
Sbjct: 148 EYFEDDYFKNTYFDKTHIDHKCKEHCSCHHDKFP 181


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
 Frame = +3

Query: 294 ILKIQLVNVEKQTGKNISLLEK*REFMMTTVILLKLA--KTCVIASMRSVLDAI------ 449
           ++ + LVN+ K       LL++  EF+  T+++L LA      I   R+++         
Sbjct: 76  LIPLLLVNIAKYWKGKPPLLKRRMEFIWITLLILALAVGGFAYIDVDRNLVQGAAMKIFS 135

Query: 450 FHVQTAIPINVAM 488
           F  QTA+PI++A+
Sbjct: 136 FTFQTALPISIAI 148


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 694 YIMLFIVLIXPEDGELEVEYFFK 626
           Y MLFI  I PE  E +++Y F+
Sbjct: 72  YYMLFISNIDPEVSENDIKYLFQ 94


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 296 DQNYLRNASFKKYILQTQNNIKKIFSSAR 210
           DQNYL N S K      + N +K F SAR
Sbjct: 46  DQNYLLNNSNKNKGSIIEENTRKPFQSAR 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,333
Number of Sequences: 5004
Number of extensions: 49168
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)