Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_D22
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 112 6e-26
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 45 1e-05
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 36 0.008
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.69
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 27 3.7
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.9
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 4.9
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 4.9
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 6.4
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 6.4
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 6.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.4
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 8.5
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 8.5
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 8.5
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 8.5
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 112 bits (270), Expect = 6e-26
Identities = 73/199 (36%), Positives = 98/199 (49%), Gaps = 12/199 (6%)
Frame = +2
Query: 284 DKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKD 460
+ GL ++A +A+S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +
Sbjct: 89 EAGLVMKDEAAHHAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGE 147
Query: 461 MHGETPYEIMFGPDICGPGTKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYTL 619
M Y IMFGPD CG + VH IF +K + HL + T+LYTL
Sbjct: 148 MSNSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYTL 206
Query: 620 IVKPDNTYEVLIDNEKVESGDLXADW--DFLPPKKIKDPEAKKPEDW--XXXXXXXXXXX 787
IVKPD T+EV I+ + V G L D+ LPP +I DPE KP DW
Sbjct: 207 IVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAVK 266
Query: 788 XXXXXXXXXXHIPDPDATK 844
IPDPDA K
Sbjct: 267 PDDWDEDAPRMIPDPDAVK 285
Score = 35.1 bits (77), Expect = 0.014
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 692 DWDFLPPKKIKDPEAKKPEDW 754
DWD P+ I DP+A KPEDW
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDW 289
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 692 DWDFLPPKKIKDPEAKKPEDW 754
DW P I DPEA+KPEDW
Sbjct: 288 DWLEDEPLYIPDPEAQKPEDW 308
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 45.2 bits (102), Expect = 1e-05
Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 8/194 (4%)
Frame = +2
Query: 164 FEEKFPDD---SWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL-S 331
F E+F + +W S W K+ G + L S D+ GL T + + + L S
Sbjct: 33 FSEQFTSEDITTWRSRW--RAPVNKDLGVWDLVEAPG-SHLRDEYGLITLKSNKPHILIS 89
Query: 332 RKFKPFSNEGK--PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDI 505
P + + P+V+ F VK + CG Y+ + + K++ E P I FG
Sbjct: 90 NLENPTTRQSSSVPIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKK 148
Query: 506 CGPGTKKVHVIFSYKGK--NHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESG 679
CG I SY GK HL + T +YTL+++ + T + D V +G
Sbjct: 149 CGMFDYISLSIISYDGKVSCHLYDAPPSGLVEGRTSMYTLLLQ-NTTVVIRRDQSVVYTG 207
Query: 680 DLXADWDFLPPKKI 721
D+ ++ P K I
Sbjct: 208 DVGTNFFHSPTKWI 221
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 35.9 bits (79), Expect = 0.008
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = -2
Query: 318 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNTSQFIE 142
N SSE F S+S SL P VN + S + ++ L S + S+ NF+S ++S +
Sbjct: 475 NYTSSEAF---STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLT 531
Query: 141 DNASKLTTTSTT 106
+ S L+T STT
Sbjct: 532 NAKSSLSTPSTT 543
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.5 bits (63), Expect = 0.69
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Frame = -2
Query: 249 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT----TSTTAFIFDSQY 82
N N F + + S +SGNFS T Q DN S +T ST F S
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFSTQPGRLSTGLHHFPSDR 634
Query: 81 HLLQTKDR 58
LL + R
Sbjct: 635 DLLSNQTR 642
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 542 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVES-GDLXADWDFLPPKK 718
S + K H KK +D Y+H+Y + P + + + ++ ES + D+LP
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196
Query: 719 IKDPEAKKPED 751
+K + P+D
Sbjct: 197 MKQKKG-GPKD 206
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 4.9
Identities = 33/128 (25%), Positives = 54/128 (42%)
Frame = -2
Query: 450 SSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGS 271
+SL S P S S + T ++ +PS + + A ++SS PLSSS
Sbjct: 12 TSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSF 71
Query: 270 LKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTAFIFD 91
PA S T L+S SS SS +++ +++ LT++S+ +
Sbjct: 72 TS--PA----------SSSFITSLVS--SSSQQSSSSSASLTSSSSATLTSSSSASPTSS 117
Query: 90 SQYHLLQT 67
S H L +
Sbjct: 118 SSSHALSS 125
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.9
Identities = 33/137 (24%), Positives = 59/137 (43%)
Frame = -2
Query: 510 PQMSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGLNLR 331
P S I S SP S SS S + S S + + + T+ + + + R
Sbjct: 336 PTSSSSTISSSSSSPSSSSFSSTTSSS---KSSSSFSSTVSSSSSTSSSTLTSSSSSSSR 392
Query: 330 ERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQ 151
+ + SS + SSS S + V+ F ++ S ++ SH SS + SS ++
Sbjct: 393 PASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHN----STSSRSSSHSSSHSLSSLSSKP 448
Query: 150 FIEDNASKLTTTSTTAF 100
+ ++S L T+S+ +
Sbjct: 449 ILTASSSSLLTSSSHTY 465
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +2
Query: 413 GGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTK----KVHVIFSYKGKNHLIKKDI 580
G +LKV + E M ETP +I++ + G+ +H K + KK++
Sbjct: 614 GKKFLKVDEATREDMLMSAETPDDILWITTLISTGSSMSHFPLHAYLEAKERQEFTKKNL 673
Query: 581 R--CKDDVYTH 607
CK+D + +
Sbjct: 674 LLFCKEDEFLY 684
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +2
Query: 590 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWDFLPPKKIKDPEAKKPED 751
D +Y L +L+ + N+YE + + + W FL D E KK ++
Sbjct: 753 DIIYERLVSLLSRVPNSYEDTLKFSAINTLQSLLFWFFLRKDNPADEEKKKDDE 806
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 425 LKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYT 604
+K+F + +K + +P+E+M P + P K H + ++R +DV T
Sbjct: 154 VKMFTQIIIEKYFNPASPHEVMLPPQLVQP---------ILDCKEHQRQDELRLFEDVET 204
Query: 605 HLYTLIVKP 631
+L ++KP
Sbjct: 205 YLLNFLLKP 213
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 318 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFP 223
N +E F+P + SL N P +N ++ ++ P
Sbjct: 685 NSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 170 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 313
+ F +D + +W EH K ++ + + FS+ DD+ + SE +
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESS 95
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 6.4
Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 1/161 (0%)
Frame = -2
Query: 519 VPGPQMSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGL 340
+P S P+ S SP S SS S S S + ++ ++ +PS + +
Sbjct: 518 IPSTSSSTPSS-SIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSV 576
Query: 339 NLRERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPNSF-PGCSLYTQLLSHESSGNFSSK 163
+ + + S +SSS + F + + + P+S S + +LS + S
Sbjct: 577 SSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLM 636
Query: 162 NTSQFIEDNASKLTTTSTTAFIFDSQYHLLQTKDRPRNQNL 40
+S I +S + ++S + S + P + L
Sbjct: 637 ISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTL 677
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -2
Query: 342 LNLRERA*NLASSEV----FKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESS 181
++LR RA L+ E+ + LS+ LK +++ FP SFP +Y + ++SS
Sbjct: 121 VDLRMRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILNDSS 178
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 167 EEKFPDDSWESNWVYS 214
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 692 DWDFLPPKKIKDPEAKKPEDW 754
DWD +P ++ K EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228
>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 807 TSLNTFQIQMPPNLK 851
T++NT++ Q PPNLK
Sbjct: 171 TAMNTYENQKPPNLK 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,793,509
Number of Sequences: 5004
Number of extensions: 86784
Number of successful extensions: 288
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -