Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_D19
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    33   0.054
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    28   2.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   4.7  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   6.1  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 573 SGKQTTAGSGGFFVCKQQITRRKKGSQEDPLIFSTGX*RSVERKLTLRDFGHEIIXK 743
           +G    A S GF +  Q+I     G Q+ P +F TG   + ++ +T+R  G  I  K
Sbjct: 26  AGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAEGRSIYGK 82


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 572 SRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTAYIPRSANPVTSG 417
           SR + S SE   L  +A ++Y S S AV+ PP +     +     A   TSG
Sbjct: 373 SRISRSASEARKLGINAQSRYASISSAVLSPPSEASRKFSLYESEAISPTSG 424


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 202 QGRXQESARGSFQGETPGIFIVLSGFATSDLSVDFCDAR-QGGGAYGKTPSKTN 44
           QG   +SAR S+ G+  GI  +L   + S    DF +    G G +G+     N
Sbjct: 522 QGTFSKSARPSYGGQQDGIIDLLYRKSVSRYETDFEELEFLGRGGFGEVVKVKN 575


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 481 GLTTATLEEQYLVSALC*SQLPSEKELVALDPANKPPLVA 600
           G+T   L     +S L     P E+E++  DP+N   LVA
Sbjct: 148 GVTVVVLLGSVYLSTLANRLEPLEREVLVTDPSNPTKLVA 187


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 539 WLQQS-ADTKYCSSSVAVVRPPLQELCST 456
           WL    AD KY    +AV+  PL+E C T
Sbjct: 371 WLSSKVADFKYEPIQMAVLHIPLKEFCET 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,447
Number of Sequences: 5004
Number of extensions: 66542
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)