Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_D19
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           33   0.40 
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232           29   4.9  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     29   4.9  
06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865...    29   6.5  
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610...    28   8.6  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 256 RKRHASRREKGGQVSGKRQGRXQESARGSFQGETPG 149
           R R   RR  GG+V+G+   R +   RG+++GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
          Length = 1035

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 34/115 (29%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
 Frame = +1

Query: 67  HRLRPPDEHH----KNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPXSDPAAYRIPVR--- 225
           HR R  D H     + R    R R+P    R ++ PP     R     P  Y +P     
Sbjct: 153 HRDRDRDRHAAGRPRGRGDDDRDRDPP---RGRSPPPYRGDDRGRYDGPPDYMLPDHPSS 209

Query: 226 LSPFGKRGAF---S*LTL*VSQFGVGRSLQAGLCARTPRFSPTAAPYPVTIVLSP 381
           L P  K G F     +TL V    +GR+    L  R+P   P   P PV +   P
Sbjct: 210 LRPARKDGEFFGEPGMTLRVCSTEMGRTSSLYLDRRSPPLPPRPPPPPVRVASPP 264


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 533 QQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 435
           Q S   K   SSVA   PP + L ST  +PR++
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = -2

Query: 632 RNLLLANKKTTATSGGLFAGSRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTA 453
           RN + AN    A+S    A     N  S       S      SSSVA   PP + L ST 
Sbjct: 206 RNSITAN---LASSSVAAASPPPRNLVSTTPVPHNSIAANLASSSVAAASPPPRNLVSTT 262

Query: 452 YIPRSANPVTS 420
            +PR  NP+ +
Sbjct: 263 PVPR--NPIAA 271


>06_02_0194 +
           12885340-12885708,12886098-12886367,12886476-12886592,
           12888044-12888094,12889599-12889719,12890146-12890311,
           12890598-12890691
          Length = 395

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -3

Query: 622 CLQTKKPPLPAVVC-----LPDQELPTLFPKVTGFSRAQIPNTVLL 500
           CL  ++PP PA +C     LPD +  T+   +  F R      VLL
Sbjct: 46  CLALRRPPPPAELCVLLNDLPDNDFATVVKSLVEFRRNNGDEPVLL 91


>10_02_0167 -
           6100676-6102111,6102174-6102708,6102967-6103975,
           6104006-6105036
          Length = 1336

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 270 QREL*ESATLPEGRKAD-RYPVSGRVGXRRAHEGASRGKRLVS 145
           QREL   AT P     D R  ++GR   RR  + A+R +R VS
Sbjct: 32  QRELPRQATPPPRGTGDLRDQINGRRKARRTRDDANRSRRHVS 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,003,839
Number of Sequences: 37544
Number of extensions: 521500
Number of successful extensions: 1505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)