Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_D17
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 30 2.8
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 29 4.9
08_01_0156 - 1233431-1233925 29 6.5
06_01_0438 + 3110703-3111945,3112486-3113057 29 6.5
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.6
06_03_0218 + 18219956-18220555 28 8.6
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63... 28 8.6
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.6
03_04_0061 - 16949038-16950006 28 8.6
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 638 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 519
SRGK L+S + R PP + + V+ + GGG G P T
Sbjct: 25 SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 766 FAPSWAVCTNPPFSPXAAPYPVTIVLSQP 852
F P AV PP P AAP PV + + P
Sbjct: 67 FVPFHAVGPPPPPQPRAAPPPVAVAMGSP 95
>08_01_0156 - 1233431-1233925
Length = 164
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -1
Query: 776 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 603
LG D TE+ A A A+R E+ GG G R G RA + +G +
Sbjct: 89 LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148
Query: 602 RVSPPLT 582
R SP ++
Sbjct: 149 RASPTVS 155
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 157 HCILVVVCPNSSMYLIMSGSN*PSXKGRSAAAVP 56
HC + +VC +S+ L++S P+ ++AA+P
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +3
Query: 354 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 509
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 303 NESAN---ARGEAVCVLGALPLPRSLTRCAR 386
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>06_03_0218 + 18219956-18220555
Length = 199
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 710 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 615
+RRE+ + +G KR+GR R G RGKR S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139
>06_01_0078 -
628946-629524,629620-629684,629814-629935,630042-630129,
630508-630819,630908-632189,632296-632784
Length = 978
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 849 LTQDDSYRIRRSXRAERGVRAHSPAWSERPTPN 751
L D++ R+RR R + G AH+P W R TP+
Sbjct: 54 LLHDEAQRLRRERRGQ-GSGAHTPRWVRR-TPD 84
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 731 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 630
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 605 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 721
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,584,312
Number of Sequences: 37544
Number of extensions: 521178
Number of successful extensions: 1639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -