Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_D16
         (920 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0691 + 12999452-12999820                                         31   1.3  
02_01_0483 - 3467813-3467873,3468072-3468154,3468505-3468579,346...    31   1.3  
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143...    29   6.9  

>02_02_0691 + 12999452-12999820
          Length = 122

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = +3

Query: 546 SKRPGTVKRPRCWRFSIGSAPLTSITKIDXQVRGGETRQDYKDTRRFPPGKLPRALSCFR 725
           S+ P    +PR WR ++GS     I+      RGG  R + +  RR   G L  A+  FR
Sbjct: 12  SEAPVVAPKPRGWRMAVGSIGGGGIS--PPVARGGR-RGERERGRRSAGGGLTGAVDAFR 68

Query: 726 PCPLTG 743
           P    G
Sbjct: 69  PAGEAG 74


>02_01_0483 -
           3467813-3467873,3468072-3468154,3468505-3468579,
           3468728-3468782,3470595-3470950
          Length = 209

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -1

Query: 764 GEKAXQVSGKRAGSETGERTRELSRGETPGIFIVLSGFATSDLXVDFCDARQGGGAYGKT 585
           GEK  +   +R  +E+GE  R+ S G+  G F+  +     ++    CD  QG G+   T
Sbjct: 89  GEKKRRRRARRDTNESGEAIRDGSEGQKEGRFLCHN--MEKEIYAQCCDI-QGQGSCSFT 145

Query: 584 PAT 576
           P T
Sbjct: 146 PIT 148


>06_01_0185 -
           1437693-1437834,1437969-1438078,1438214-1438264,
           1438877-1439122,1439244-1439315,1439614-1439648,
           1439755-1439845,1440546-1440610,1440733-1440813,
           1441020-1441137,1441535-1441627,1441865-1441997,
           1442471-1442503,1443264-1443343,1443444-1443549,
           1443621-1443795,1443884-1443980,1444819-1445251,
           1445329-1445459,1446052-1446341,1446429-1447002
          Length = 1051

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 635 SSQRWRNPTGL*RYQAFPPWKAPSCAL 715
           S +RWR+   +  + AF    APSCAL
Sbjct: 322 SRRRWRHAAAISSFSAFVAENAPSCAL 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,244,640
Number of Sequences: 37544
Number of extensions: 325221
Number of successful extensions: 776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)