Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_D13
         (956 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.55 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.73 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +2

Query: 431 GGXXPXXXXPPPPGXXGXGFXXPPXXPP 514
           GG  P    PPPPG  G G   PP  PP
Sbjct: 759 GGPPPP---PPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 509 PPXXPRXPGFWGGGXXXPPP 568
           PP  P  PG  G G   PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 804 GXRPGXXXXXPXGGGGPPXGXGGXGXXGXF 715
           G   G       G GGPP G GG G  G F
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGF 213



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 23/65 (35%), Positives = 24/65 (36%)
 Frame = -3

Query: 567 GGGXXXPPPQNPGXRGXXGGXXGGXXKPNPXXPGGGGXXXXGKXPPPPPXXGKKKXXPXG 388
           GGG   PPP  PG  G  GG  GG    +    G GG    G     P   G       G
Sbjct: 194 GGGSGGPPP-GPGGFGGFGG-FGGEGHHHGGHGGFGG--GPGGFEGGPGGFGGGPGGFGG 249

Query: 387 GXXGF 373
           G  GF
Sbjct: 250 GLGGF 254



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 565 GGXXXXPPPKPGXPGXXGGXXG 500
           GG    PPP PG  G  GG  G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGG 215


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 497 PPXXPPXXPRXPGFWGGGXXXPPPXGG 577
           PP  PP  P  PGF       PPP  G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,544
Number of Sequences: 5004
Number of extensions: 24175
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)