Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_D09
         (916 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.62 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   5.8  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 747 PPHXXXPPPTPXXPGXGPPXPXXXP 821
           PPH    PP+   P  G P P   P
Sbjct: 61  PPHHYGGPPSGGQPPQGMPYPRFPP 85


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 818 PPPPPPXKXPPXPP 859
           PPPP P   PP  P
Sbjct: 736 PPPPHPHHQPPRNP 749


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 818 PPPPPPXKXPPXPP 859
           PPPP P   PP  P
Sbjct: 628 PPPPHPHHQPPRNP 641


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 827 PPPXKXPPXPPPPXXXP 877
           PP  + PP P PP   P
Sbjct: 175 PPLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.311    0.147    0.500 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,148
Number of Sequences: 336
Number of extensions: 2275
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25547951
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)