Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_D07
         (1107 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    35   0.023
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.50 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.50 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.2  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 34.7 bits (76), Expect = 0.023
 Identities = 19/74 (25%), Positives = 20/74 (27%)
 Frame = +2

Query: 683 PPXPPQXPPTPXXXPPTPXXXPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPPQXNXX 862
           PP P   PP P   PP P   PPP                           PPPP     
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210

Query: 863 XXXTPXXXAXPPPP 904
              T    +   PP
Sbjct: 211 VANTSSRPSSFAPP 224



 Score = 30.3 bits (65), Expect = 0.50
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 683 PPXPPQXPPTPXXXPPTPXXXPP 751
           PP P   PP+P   PP P   PP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPP 166



 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 692 PPQXPPTPXXXPPTPXXXPP 751
           P   PP P   PP+P   PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPP 159


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = +2

Query: 677  PXPPXPPQXPPTPXXXPPTPXXXP--PP 754
            P PP PP   P P   PP P   P  PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 686  PXPPQXPPTPXXXPPTPXXXPPP 754
            P PP  PP P   P  P   PPP
Sbjct: 1715 PPPPSAPPMPAGPPSAP---PPP 1734


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 683 PPXPPQXPPTPXXXPPTPXXXPPP 754
           P  PP  PP P   PP+    PPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 683 PPXPPQXPPTPXXXPPTPXXXPPP 754
           PP  P  PP P    P     PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 18/72 (25%), Positives = 20/72 (27%)
 Frame = +2

Query: 536  PAPXXKXPXLRPPXXAPTTKKXXFXLFNTPLFXXXXXXXXXXXGXXXPXPPXPPQXPPTP 715
            P P    P +  P  AP   K        P                 P PP P + PP P
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP-PSEAPPVP 1201

Query: 716  XXXPPTPXXXPP 751
                  P   PP
Sbjct: 1202 KPSVGVPPVPPP 1213


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 683 PPXPPQXPPTPXXXPPTPXXXPP 751
           PP PP  P      PP P   PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 677 PXPPXPPQXPPTPXXXPPTPXXXPPP 754
           P PP P    PTP    P P   PPP
Sbjct: 732 PPPPPPAVIVPTP---APAPIPVPPP 754


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 677 PXPPXPPQXPPTPXXXPPTPXXXP 748
           P PP  P  PP P   P  P   P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPP 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,012
Number of Sequences: 5004
Number of extensions: 19309
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 585701508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)