Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C21
         (966 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.24 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.42 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.74 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   0.78 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.98 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
 Frame = +2

Query: 887 AXXPPGPPXPXPPXP----PPXPXPPP 955
           A  PPG P P PP P    P  P PPP
Sbjct: 2   ASLPPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 896 PPGPPXPXPPXPPPXPXPP 952
           PP PP   PP  PP P PP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 896 PPGPPXPXPPXPPPXPXPPP 955
           PP PP      PPP P PPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 887 AXXPPGPPXPXPPXPPPXPXPP 952
           A  P  PP P    PPP P PP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 5/23 (21%)
 Frame = +2

Query: 902 GPPXPXPPXP-----PPXPXPPP 955
           GPP P PP       PP P PPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 896 PPGPPXPXPPXPPPXPXPPP 955
           PP PP P      P P PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 896 PPGPPXPXPPXPPPXPXPPP 955
           PP PP    P P P P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVP 752



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
 Frame = +2

Query: 896 PPGPPXPXP-PXPPPXPXPPP 955
           PP P    P P P P P PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPP 754


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = +2

Query: 887  AXXPPGPPX--PXPPXPPPXPXPPP 955
            A  PP PP   P PP  PP P  PP
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPP 1728



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 896  PPGPPXPXPPXPPPXPXPPP 955
            PP P  P  P  PP   PPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 896  PPGPPXPXPPXPPPXPXPPP 955
            PP    P PP PP    PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPP 1718


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect(2) = 0.78
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 920 PPXPPPXPXPPP 955
           P  PPP P PPP
Sbjct: 942 PAFPPPPPPPPP 953



 Score = 22.6 bits (46), Expect(2) = 0.78
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 914 PXPPXPPPXP 943
           P PP PPP P
Sbjct: 905 PTPPPPPPLP 914


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -1

Query: 966 GXXXGGGXGXGGGXGGXGXGGPGG 895
           G   GG  G GGG GG   GGPGG
Sbjct: 238 GGFGGGPGGFGGGLGG-FGGGPGG 260



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 954 GGGXGXGGGXGGXGXGGPGG 895
           GGG G  GG  G   GGPGG
Sbjct: 248 GGGLGGFGGGPGGFGGGPGG 267



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -1

Query: 966 GXXXGGGXGXGGGXGGXG--XGGPGG 895
           G   G G G GG  GG G   GGPGG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGG 246



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 954 GGGXGXGGGXGGXGXGGPGG 895
           GGG G  GG  G    GPGG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGG 206


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +2

Query: 887 AXXPPGPPXPXP-PXPPPXPXPPP 955
           A  P  PP P   P PPP P P P
Sbjct: 461 AGMPAAPPLPPAAPAPPPAPAPAP 484


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 908 PXPXPPXPPPXPXPP 952
           P P PP PPP   PP
Sbjct: 234 PLPAPPPPPPPTLPP 248



 Score = 24.2 bits (50), Expect(2) = 4.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 899 PGPPXPXPPXPPP 937
           P PP P PP  PP
Sbjct: 236 PAPPPPPPPTLPP 248



 Score = 20.6 bits (41), Expect(2) = 4.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +2

Query: 914 PXPPXPPPXPXPPP 955
           P PP  P  P  PP
Sbjct: 273 PPPPATPSQPPRPP 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,280,972
Number of Sequences: 5004
Number of extensions: 12658
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)