Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C20
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   126   4e-31
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   126   4e-31
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  126 bits (303), Expect = 4e-31
 Identities = 81/173 (46%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
 Frame = +1

Query: 265 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 444
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 445 VRIPKEQGSPFILAW--*LRQRHQVLPDPGAQLRLQGQVQ----AGVPRRALTRRRSSGV 606
           VRIPKEQG  F+  W   L    +  P        + + +     GV +     R   G 
Sbjct: 61  VRIPKEQG--FLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGN 118

Query: 607 TSLVIWXXXXXXXXXLCASCTPLTSHVPVLPPMSVKGDGXREFSGLGNCISKI 765
            +             LC    PL      L     K  G REF+GLGNC++KI
Sbjct: 119 LA----SGGAAGATSLC-FVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKI 166



 Score =  120 bits (290), Expect = 1e-29
 Identities = 62/101 (61%), Positives = 66/101 (65%)
 Frame = +3

Query: 576 GVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGRWPX*ILRSRKLH 755
           GVDK TQF RYF            TSLCFVYPLDFARTRLAADVGK              
Sbjct: 104 GVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCL 163

Query: 756 QQDLKSDGLIGLXRGFGVSVXGIIIYRASYFGFYDTXRGML 878
            +  K+DG+ GL RGFGVSV GIIIYRA+YFGFYDT RGML
Sbjct: 164 TKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGML 204



 Score = 79.4 bits (187), Expect = 4e-17
 Identities = 34/37 (91%), Positives = 35/37 (94%)
 Frame = +2

Query: 467 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 577
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGG
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGG 104


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  126 bits (303), Expect = 4e-31
 Identities = 81/173 (46%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
 Frame = +1

Query: 265 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 444
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 445 VRIPKEQGSPFILAW--*LRQRHQVLPDPGAQLRLQGQVQ----AGVPRRALTRRRSSGV 606
           VRIPKEQG  F+  W   L    +  P        + + +     GV +     R   G 
Sbjct: 61  VRIPKEQG--FLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGN 118

Query: 607 TSLVIWXXXXXXXXXLCASCTPLTSHVPVLPPMSVKGDGXREFSGLGNCISKI 765
            +             LC    PL      L     K  G REF+GLGNC++KI
Sbjct: 119 LA----SGGAAGATSLC-FVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKI 166



 Score =  120 bits (290), Expect = 1e-29
 Identities = 62/101 (61%), Positives = 66/101 (65%)
 Frame = +3

Query: 576 GVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGRWPX*ILRSRKLH 755
           GVDK TQF RYF            TSLCFVYPLDFARTRLAADVGK              
Sbjct: 104 GVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCL 163

Query: 756 QQDLKSDGLIGLXRGFGVSVXGIIIYRASYFGFYDTXRGML 878
            +  K+DG+ GL RGFGVSV GIIIYRA+YFGFYDT RGML
Sbjct: 164 TKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGML 204



 Score = 79.4 bits (187), Expect = 4e-17
 Identities = 34/37 (91%), Positives = 35/37 (94%)
 Frame = +2

Query: 467 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 577
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGG
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGG 104


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 740 PENSRWPSPFTDIGGKTGTCEVK 672
           P N RW  P  ++GG +G    K
Sbjct: 613 PLNIRWSYPGEEMGGSSGVLAKK 635


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,578
Number of Sequences: 438
Number of extensions: 4472
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)