Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C19
         (932 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.009
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.70 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 31.9 bits (69), Expect = 0.009
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 214 CYRNQRPVCGTDGKTYNNECLL 279
           C R  RPVC ++GK Y N C L
Sbjct: 110 CPRRHRPVCASNGKIYANHCEL 131


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 871 PPPXPXPPPPXXXXP 915
           P P P PPPP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 874 PPXPXPPPP 900
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 22.2 bits (45), Expect(2) = 0.70
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 773 PPXPPXXPPPP 805
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.4 bits (43), Expect(2) = 0.70
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 881 PXXPPPPPXXPXP 919
           P  PPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 303 GIISGGTVEQALVVVRFPISAAHWSL 226
           GI SG +   +LVVV   IS   W L
Sbjct: 53  GIASGLSAMLSLVVVTVAISTGEWLL 78


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 689 PXXXPPPXXXXPPXXXPXXPXXPXXXPXPPXPPXXPP 799
           P   P P    P       P  P   P P  PP  PP
Sbjct: 21  PGPQPSPHQS-PQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +2

Query: 185  QHLPIHQAVRATETSDQCAALMGKRTTTSACSTV 286
            QH P HQ   +T    Q   L G     SA S V
Sbjct: 916  QHFPHHQIQVSTSAGLQTIRLSGHSVLHSAQSVV 949


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,471
Number of Sequences: 438
Number of extensions: 5512
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)