Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C17
         (946 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.      54   1e-07
AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical...    54   1e-07

>AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.
          Length = 213

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 30/99 (30%), Positives = 45/99 (45%)
 Frame = +2

Query: 332 MSLQWTIIAX*LYXXIXXXRLXTWPIXSPNRWQKCSKSKXXAXISGQASIXXLXLXGVXI 511
           M+LQWTI+A  LY  I        P   P  W K  KS+    ++  A I  +    V  
Sbjct: 1   MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60

Query: 512 SCLXDAIRDMXXYSNIEPAEHQXLDAEXQGNMRXFRAQR 628
               D +R+   Y+ +E    +  +++   +MR FRAQR
Sbjct: 61  ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQR 99


>AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical
           protein Y54G2A.18 protein.
          Length = 213

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 30/99 (30%), Positives = 45/99 (45%)
 Frame = +2

Query: 332 MSLQWTIIAX*LYXXIXXXRLXTWPIXSPNRWQKCSKSKXXAXISGQASIXXLXLXGVXI 511
           M+LQWTI+A  LY  I        P   P  W K  KS+    ++  A I  +    V  
Sbjct: 1   MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60

Query: 512 SCLXDAIRDMXXYSNIEPAEHQXLDAEXQGNMRXFRAQR 628
               D +R+   Y+ +E    +  +++   +MR FRAQR
Sbjct: 61  ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQR 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,158,563
Number of Sequences: 27780
Number of extensions: 125292
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)