Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C16
         (987 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    28   1.8  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   5.4  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   7.1  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   7.1  

>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 159 YYXVMDSLYLNHSSKLEGWXXHGXTQLGTQL 67
           Y   MD +Y+  +    GW  H   QLG Q+
Sbjct: 377 YIAAMDGIYVGENKIRGGWFDHHWRQLGLQM 407


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 635 EHHKNRRSSQRWRNPTGL*RYQAFPLEAP 721
           ++HKNR+S+     P GL  Y+A  L  P
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGP 417


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 847 SXRXTPNXDTYSVSYEKAPRFPK 779
           S   +P  D+YS  YEK   FPK
Sbjct: 131 SRANSPQSDSYSSPYEKGKLFPK 153


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 795 RHASRREKGGQV---SGKRQGRNRRAHEGASR 709
           +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,081
Number of Sequences: 5004
Number of extensions: 39115
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)