Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP10_F_C15
         (1063 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.7  
11_04_0415 - 17395988-17396161,17397349-17397444,17397489-173980...    29   6.2  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 1031 PPGXXXKXRXPPPRGGXKXGXPPP 960
            PP        PPP GG K G PPP
Sbjct: 357  PPPKGPSPPPPPPPGGKKGGPPPP 380



 Score = 29.9 bits (64), Expect = 3.6
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 1049 AQGAXXPPGXXXKXRXPPPRGGXKXGXPPP 960
            A+G   PP        PPP  G K G PPP
Sbjct: 350  AKGPPPPPPPKGPSPPPPPPPGGKKGGPPP 379


>11_04_0415 -
           17395988-17396161,17397349-17397444,17397489-17398026,
           17398106-17398422
          Length = 374

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 504 GGGGGXXGFFLXXXRGLSPXXPRGWG 581
           GGGGG  GF     RG     PRG+G
Sbjct: 11  GGGGGPRGFGGGGPRGFGGGGPRGFG 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,835,884
Number of Sequences: 37544
Number of extensions: 221092
Number of successful extensions: 1476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3152842920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)