Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP10_F_C13
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.010
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 34 0.024
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.031
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.055
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.095
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.22
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.1
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.3
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.5 bits (78), Expect = 0.010
Identities = 41/153 (26%), Positives = 43/153 (28%), Gaps = 9/153 (5%)
Frame = +2
Query: 452 PPXTPXPRXXGWGXXXHXPQXGXXXXP-------QXXGXPQXKXFXQXXXKXPXPXKXPX 610
PP P PR G PQ P P + P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 611 GXLFPXGXPPLXNLXKXPPPXQXXQXPTGX*KSXXFPPXKPPXLPPXVP--XPAGXPXXX 784
G P PPL N + P PT PP PP LPP P P G P
Sbjct: 397 GRSAP-ALPPLGNASRTSTPP----VPT----PPSLPPSAPPSLPPSAPPSLPMGAP--A 445
Query: 785 XPXXPPFGKXXPLXXNPPPXXXPXSRXXXPPPP 883
P PP P P P PPP
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Frame = +2
Query: 719 PPXKPPXL----PPXVPXPAGXPXXXXPXXPPFGKXXPLXXNPPPXXXPXSRXXXPPP 880
PP + P L PP +P P+ P PP P+ N P S+ PPP
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPP-RPIAPVSMN--PAINSTSKPPLPPP 295
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 34.3 bits (75), Expect = 0.024
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = -2
Query: 881 GGGGP*XGXXGXXXGGGXG--KGATXXRXGXXGGXGIXXNRQGXEXGGAXGGVXRGEXPG 708
GG G G G GGG G +G R G GG G +G GGA + G
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKVIIEPHRHAG 82
Query: 707 IFI 699
+FI
Sbjct: 83 VFI 85
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -2
Query: 836 GGXGKGATXXRXGXXGGXGIXXNRQGXEXGGAXGGVXRG 720
GG G G+ R G GG G +G GG GG G
Sbjct: 9 GGRG-GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.9 bits (74), Expect = 0.031
Identities = 36/159 (22%), Positives = 42/159 (26%), Gaps = 10/159 (6%)
Frame = +2
Query: 437 PLPXPPPXTPXPRXXGWGXXXHXPQXGXXXXPQXXGXPQXKXFXQXXXKXPXPXKXPXGX 616
P+P P P P+ P P G P P P P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Query: 617 LFPXGXPPLXNLXKXPP-PXQXXQXPTGX*KSXXFPPXK------PPXLPPXVPXPAGXP 775
PP+ PP P P S PP PP PP P P
Sbjct: 1144 KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Query: 776 XXXXPXXPPFGKXXPL---XXNPPPXXXPXSRXXXPPPP 883
P PP P+ PP P ++ P P
Sbjct: 1204 SVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 31.9 bits (69), Expect = 0.13
Identities = 38/161 (23%), Positives = 44/161 (27%)
Frame = +2
Query: 401 PXPRXKXXXXXXPLPXPPPXTPXPRXXGWGXXXHXPQXGXXXXPQXXGXPQXKXFXQXXX 580
P P+ P P P P + P G P G P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPA--------PSGAPPVPAPSGIPPVPKPSVAAP 1102
Query: 581 KXPXPXKXPXGXLFPXGXPPLXNLXKXPPPXQXXQXPTGX*KSXXFPPXKPPXLPPXVPX 760
P P P G PP+ PP P+G P KP P VP
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPV---PSGAP-----PVPKPSVAAPPVPA 1154
Query: 761 PAGXPXXXXPXXPPFGKXXPLXXNPPPXXXPXSRXXXPPPP 883
P+G P P P PP P + PPP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAP-SSGIPPVPKPAAGVPPVPPP 1194
Score = 29.5 bits (63), Expect = 0.67
Identities = 25/88 (28%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Frame = +2
Query: 623 PXGXPPLXNLXKXPP-PXQXXQXPTGX*KSXXFPPXKPPXLPPXVPXPAGXPXXXXPXXP 799
P P L + PP P + P S PP P P VP P P P
Sbjct: 999 PVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTS-----TPPVP 1053
Query: 800 PFGKXXPLXXNPPPXXXPXSRXXXPPPP 883
P PPP P S P P
Sbjct: 1054 KSSSGAP--SAPPPVPAPSSEIPSIPAP 1079
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.055
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +2
Query: 731 PPXLPP--XVPXPAGXPXXXXPXXPPFGKXXPLXXNPPPXXXPXSRXXXPPPP 883
PP PP VP PA P P P G P PPP + PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP---PPPPPGVAGAGPPPPPPP 781
Score = 29.9 bits (64), Expect = 0.51
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 781 PXPPFXPXRXXVAPXPXPPPXXXPXXPXXGPPPP 882
P PP P P P PP P PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 781 PXPPFXPXRXXVAPXPXPPPXXXPXXPXXGPPPP 882
P P AP P PPP P PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 29.1 bits (62), Expect = 0.89
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 787 PPFXPXRXXVAPXPXPPPXXXPXXPXXGPPPP 882
PP P P P P P P GPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 781 PXPPFXPXRXXVAPXPXPPPXXXPXXPXXGPPPPXXG 891
P PP AP P P P P PPPP G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/77 (27%), Positives = 22/77 (28%)
Frame = +2
Query: 650 LXKXPPPXQXXQXPTGX*KSXXFPPXKPPXLPPXVPXPAGXPXXXXPXXPPFGKXXPLXX 829
L PPP PT P P +PP P G P P P
Sbjct: 729 LKSPPPPPPAVIVPT--------PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Query: 830 NPPPXXXPXSRXXXPPP 880
PP SR P P
Sbjct: 781 PPPAVSAGGSRYYAPAP 797
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.095
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +2
Query: 722 PXKPPXLPPXVPXPAGXPXXXXPXXPPFGKXXPLXXNPPPXXXPXSRXXXPPPP 883
P P PP P A P P PP P + PP P PPPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP--MPAGPPSAPPPP 1734
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/71 (28%), Positives = 21/71 (29%)
Frame = +2
Query: 623 PXGXPPLXNLXKXPPPXQXXQXPTGX*KSXXFPPXKPPXLPPXVPXPAGXPXXXXPXXPP 802
P PP+ PP P PP P P P PAG P P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPP--------PPMSVPPPPSAPPMPAGPPSAPPPPLP- 1736
Query: 803 FGKXXPLXXNP 835
P NP
Sbjct: 1737 -ASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.22
Identities = 29/112 (25%), Positives = 34/112 (30%), Gaps = 16/112 (14%)
Frame = +2
Query: 593 PXKXPXGXLFPXGXPPLXNLXKX------------PPPXQXXQXPTGX*KSXXFPPXKPP 736
P G LF G P L ++ K P P + PT PP P
Sbjct: 96 PSMPALGGLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPA 155
Query: 737 XLPP----XVPXPAGXPXXXXPXXPPFGKXXPLXXNPPPXXXPXSRXXXPPP 880
PP P P+ P P P K P + P P PPP
Sbjct: 156 SAPPIPSKAPPIPSSLPPPAQPAAPV--KSPPSAPSLPSAVPPMPPKVPPPP 205
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 820 PXPXPPPXXXPXXPXXGPPPPXXG 891
P P PPP P P PPPP G
Sbjct: 10 PPPPPPPGFEP--PSQPPPPPPPG 31
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 822 FXXTPPLXXXPXPGLXXPPPP 884
F P P PGL PPPP
Sbjct: 32 FEGAQPQWEPPIPGLHIPPPP 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,767
Number of Sequences: 5004
Number of extensions: 17714
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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